Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0560

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0559 and Psyr_0560 are separated by 45 nucleotidesPsyr_0560 and Psyr_0561 are separated by 207 nucleotides Psyr_0559: Psyr_0559 - thiosulfate sulfurtransferase, at 634,369 to 636,201 _0559 Psyr_0560: Psyr_0560 - conserved hypothetical protein, at 636,247 to 637,782 _0560 Psyr_0561: Psyr_0561 - chemotaxis motA protein, at 637,990 to 638,841 _0561 Position (kb) 636 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1at 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.442 kb on - strand, within Psyr_0559at 635.442 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.761 kb on - strand, within Psyr_0559at 635.868 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 636.049 kb on - strandat 636.049 kb on - strandat 636.049 kb on - strandat 636.096 kb on - strandat 636.236 kb on + strandat 636.237 kb on - strandat 636.237 kb on - strandat 636.264 kb on + strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.484 kb on + strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.787 kb on + strand, within Psyr_0560at 636.788 kb on - strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 637.146 kb on + strand, within Psyr_0560at 637.147 kb on - strand, within Psyr_0560at 637.709 kb on - strandat 637.771 kb on + strandat 637.771 kb on + strandat 637.772 kb on - strandat 637.772 kb on - strandat 637.772 kb on - strandat 637.805 kb on - strandat 637.805 kb on - strandat 637.859 kb on + strandat 637.859 kb on + strandat 637.860 kb on - strandat 637.860 kb on - strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.871 kb on + strandat 637.872 kb on - strandat 637.872 kb on - strandat 637.872 kb on - strandat 637.899 kb on + strandat 637.900 kb on - strandat 637.900 kb on - strandat 637.913 kb on + strandat 637.979 kb on + strandat 637.990 kb on - strandat 637.996 kb on - strandat 638.041 kb on + strandat 638.042 kb on - strandat 638.084 kb on - strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.143 kb on + strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.144 kb on - strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.206 kb on + strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.207 kb on - strand, within Psyr_0561at 638.209 kb on + strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.210 kb on - strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.359 kb on + strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.360 kb on - strand, within Psyr_0561at 638.499 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.594 kb on + strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561at 638.595 kb on - strand, within Psyr_0561

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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635,262 - Psyr_0559 0.49 +0.1
635,262 - Psyr_0559 0.49 +0.2
635,262 - Psyr_0559 0.49 +0.0
635,262 - Psyr_0559 0.49 -0.2
635,442 - Psyr_0559 0.59 +0.5
635,442 - Psyr_0559 0.59 +0.9
635,484 - Psyr_0559 0.61 -0.1
635,484 - Psyr_0559 0.61 +0.0
635,484 - Psyr_0559 0.61 +1.1
635,484 - Psyr_0559 0.61 +1.1
635,484 - Psyr_0559 0.61 +0.6
635,745 - Psyr_0559 0.75 -0.6
635,745 - Psyr_0559 0.75 +1.1
635,745 - Psyr_0559 0.75 -2.3
635,761 - Psyr_0559 0.76 -0.6
635,868 - Psyr_0559 0.82 +0.3
635,952 - Psyr_0559 0.86 -1.0
635,952 - Psyr_0559 0.86 -0.1
635,952 - Psyr_0559 0.86 +0.4
635,952 - Psyr_0559 0.86 +0.7
635,952 - Psyr_0559 0.86 -0.4
636,049 - -0.5
636,049 - +0.2
636,049 - -1.7
636,096 - -0.3
636,236 + +0.6
636,237 - -0.5
636,237 - -0.2
636,264 + -0.3
636,265 - +0.1
636,265 - -0.1
636,265 - -0.3
636,265 - -1.2
636,265 - -0.2
636,288 + -0.6
636,288 + +0.1
636,288 + -0.3
636,288 + -0.8
636,288 + -0.8
636,288 + +0.3
636,288 + -0.4
636,289 - -0.2
636,289 - +0.5
636,289 - -0.1
636,289 - -1.8
636,289 - -1.9
636,289 - -1.0
636,289 - -1.4
636,289 - -0.1
636,484 + Psyr_0560 0.15 +0.5
636,485 - Psyr_0560 0.15 +0.6
636,485 - Psyr_0560 0.15 -0.9
636,485 - Psyr_0560 0.15 -0.1
636,787 + Psyr_0560 0.35 -0.1
636,788 - Psyr_0560 0.35 +0.5
636,895 + Psyr_0560 0.42 -0.9
636,895 + Psyr_0560 0.42 -0.2
636,895 + Psyr_0560 0.42 -0.1
636,895 + Psyr_0560 0.42 +0.3
636,895 + Psyr_0560 0.42 +0.0
636,896 - Psyr_0560 0.42 -2.6
636,896 - Psyr_0560 0.42 -0.4
636,896 - Psyr_0560 0.42 -0.6
636,896 - Psyr_0560 0.42 -0.1
636,896 - Psyr_0560 0.42 +0.9
636,921 - Psyr_0560 0.44 +0.2
636,921 - Psyr_0560 0.44 +0.1
636,921 - Psyr_0560 0.44 -0.0
637,146 + Psyr_0560 0.59 -0.1
637,147 - Psyr_0560 0.59 -1.0
637,709 - +0.1
637,771 + +0.1
637,771 + -1.1
637,772 - -0.3
637,772 - -0.7
637,772 - -1.1
637,805 - -0.3
637,805 - -1.4
637,859 + +0.3
637,859 + +0.8
637,860 - -0.7
637,860 - -1.6
637,871 + +0.5
637,871 + -0.4
637,871 + +1.6
637,871 + -0.5
637,872 - -0.4
637,872 - -1.1
637,872 - -0.2
637,899 + -2.5
637,900 - -2.1
637,900 - -1.2
637,913 + -0.3
637,979 + -0.2
637,990 - -0.5
637,996 - -1.0
638,041 + +0.7
638,042 - -0.8
638,084 - Psyr_0561 0.11 -1.1
638,143 + Psyr_0561 0.18 -0.7
638,143 + Psyr_0561 0.18 -1.6
638,143 + Psyr_0561 0.18 -1.4
638,143 + Psyr_0561 0.18 +0.3
638,143 + Psyr_0561 0.18 -1.3
638,144 - Psyr_0561 0.18 -1.3
638,144 - Psyr_0561 0.18 -0.9
638,144 - Psyr_0561 0.18 -2.2
638,206 + Psyr_0561 0.25 -0.3
638,206 + Psyr_0561 0.25 -3.0
638,206 + Psyr_0561 0.25 -0.7
638,206 + Psyr_0561 0.25 -0.1
638,206 + Psyr_0561 0.25 -0.3
638,207 - Psyr_0561 0.25 -0.1
638,207 - Psyr_0561 0.25 -0.2
638,207 - Psyr_0561 0.25 -0.6
638,207 - Psyr_0561 0.25 -0.4
638,207 - Psyr_0561 0.25 -0.3
638,207 - Psyr_0561 0.25 -1.0
638,207 - Psyr_0561 0.25 -0.8
638,209 + Psyr_0561 0.26 -0.5
638,210 - Psyr_0561 0.26 -3.1
638,210 - Psyr_0561 0.26 -0.7
638,210 - Psyr_0561 0.26 -0.5
638,210 - Psyr_0561 0.26 -0.2
638,359 + Psyr_0561 0.43 -0.2
638,359 + Psyr_0561 0.43 -0.4
638,359 + Psyr_0561 0.43 -1.3
638,359 + Psyr_0561 0.43 -2.0
638,359 + Psyr_0561 0.43 -1.4
638,359 + Psyr_0561 0.43 -1.6
638,360 - Psyr_0561 0.43 -2.1
638,360 - Psyr_0561 0.43 -0.2
638,360 - Psyr_0561 0.43 -1.1
638,360 - Psyr_0561 0.43 -0.7
638,360 - Psyr_0561 0.43 -1.4
638,499 + Psyr_0561 0.60 -0.4
638,594 + Psyr_0561 0.71 +0.8
638,594 + Psyr_0561 0.71 -0.9
638,594 + Psyr_0561 0.71 +0.3
638,594 + Psyr_0561 0.71 -1.1
638,594 + Psyr_0561 0.71 -1.5
638,594 + Psyr_0561 0.71 +0.1
638,595 - Psyr_0561 0.71 -0.5
638,595 - Psyr_0561 0.71 -1.8
638,595 - Psyr_0561 0.71 -0.2
638,595 - Psyr_0561 0.71 +1.2
638,595 - Psyr_0561 0.71 +0.3
638,595 - Psyr_0561 0.71 +0.2
638,595 - Psyr_0561 0.71 +0.3
638,595 - Psyr_0561 0.71 -0.8

Or see this region's nucleotide sequence