Experiment: library passed through aphids in food, 24 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0523 and Psyr_0524 overlap by 1 nucleotides Psyr_0524 and Psyr_0525 overlap by 4 nucleotides Psyr_0525 and Psyr_0526 overlap by 1 nucleotides
Psyr_0523: Psyr_0523 - Lipopolysaccharide kinase, at 585,620 to 586,426
_0523
Psyr_0524: Psyr_0524 - Lipopolysaccharide kinase, at 586,426 to 587,160
_0524
Psyr_0525: Psyr_0525 - Lipopolysaccharide kinase, at 587,157 to 587,936
_0525
Psyr_0526: Psyr_0526 - conserved hypothetical protein, at 587,936 to 589,381
_0526
Position (kb) 587
588 Strain fitness (log2 ratio) -1
0
1 at 586.570 kb on + strand, within Psyr_0524 at 586.570 kb on + strand, within Psyr_0524 at 586.570 kb on + strand, within Psyr_0524 at 586.573 kb on + strand, within Psyr_0524 at 586.573 kb on + strand, within Psyr_0524 at 586.617 kb on + strand, within Psyr_0524 at 586.893 kb on + strand, within Psyr_0524 at 587.121 kb on + strand at 587.121 kb on + strand at 587.130 kb on + strand at 587.130 kb on + strand at 587.168 kb on + strand at 587.191 kb on + strand at 587.343 kb on + strand, within Psyr_0525 at 587.343 kb on + strand, within Psyr_0525 at 587.343 kb on + strand, within Psyr_0525 at 587.454 kb on + strand, within Psyr_0525 at 587.454 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.632 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.657 kb on + strand, within Psyr_0525 at 587.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours remove 586,570 + Psyr_0524 0.20 -0.4 586,570 + Psyr_0524 0.20 -1.7 586,570 + Psyr_0524 0.20 -1.6 586,573 + Psyr_0524 0.20 +0.6 586,573 + Psyr_0524 0.20 -0.5 586,617 + Psyr_0524 0.26 -0.9 586,893 + Psyr_0524 0.64 +1.7 587,121 + -0.5 587,121 + -1.3 587,130 + -1.0 587,130 + +0.2 587,168 + -0.2 587,191 + +0.4 587,343 + Psyr_0525 0.24 -0.9 587,343 + Psyr_0525 0.24 -1.1 587,343 + Psyr_0525 0.24 +0.6 587,454 + Psyr_0525 0.38 -1.5 587,454 + Psyr_0525 0.38 -0.5 587,632 + Psyr_0525 0.61 -0.0 587,632 + Psyr_0525 0.61 -0.1 587,632 + Psyr_0525 0.61 +0.6 587,632 + Psyr_0525 0.61 -0.9 587,632 + Psyr_0525 0.61 -1.0 587,632 + Psyr_0525 0.61 -1.5 587,632 + Psyr_0525 0.61 -1.5 587,657 + Psyr_0525 0.64 -0.5 587,657 + Psyr_0525 0.64 -0.7 587,657 + Psyr_0525 0.64 -0.3 587,657 + Psyr_0525 0.64 +0.5 587,921 + +0.4
Or see this region's nucleotide sequence