Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0278

Experiment: library passed through aphids in food, 24 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0276 and Psyr_0277 overlap by 1 nucleotidesPsyr_0277 and Psyr_0278 overlap by 8 nucleotidesPsyr_0278 and Psyr_0279 are separated by 38 nucleotidesPsyr_0279 and Psyr_0280 are separated by 152 nucleotides Psyr_0276: Psyr_0276 - zinc uptake regulation protein, putative, at 294,518 to 295,000 _0276 Psyr_0277: Psyr_0277 - ABC transporter, at 295,000 to 295,788 _0277 Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569 _0278 Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324 _0279 Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627 _0280 Position (kb) 295 296 297Strain fitness (log2 ratio) -2 -1 0 1at 294.976 kb on - strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.016 kb on + strandat 295.017 kb on - strandat 295.017 kb on - strandat 295.017 kb on - strandat 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.213 kb on + strand, within Psyr_0277at 295.214 kb on - strand, within Psyr_0277at 295.460 kb on + strand, within Psyr_0277at 295.461 kb on - strand, within Psyr_0277at 295.480 kb on + strand, within Psyr_0277at 295.481 kb on - strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.681 kb on + strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.682 kb on - strand, within Psyr_0277at 295.776 kb on + strandat 295.776 kb on + strandat 295.776 kb on + strandat 295.777 kb on - strandat 295.777 kb on - strandat 295.794 kb on + strandat 295.795 kb on - strandat 295.795 kb on - strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.799 kb on + strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.800 kb on - strandat 295.877 kb on + strand, within Psyr_0278at 295.877 kb on + strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 295.878 kb on - strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.278 kb on + strand, within Psyr_0278at 296.279 kb on - strand, within Psyr_0278at 296.279 kb on - strand, within Psyr_0278at 296.279 kb on - strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.356 kb on + strand, within Psyr_0278at 296.357 kb on - strand, within Psyr_0278at 296.357 kb on - strand, within Psyr_0278at 296.466 kb on + strand, within Psyr_0278at 296.467 kb on - strand, within Psyr_0278at 296.506 kb on + strandat 296.506 kb on + strandat 296.506 kb on + strandat 296.506 kb on + strandat 296.506 kb on + strandat 296.506 kb on + strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.507 kb on - strandat 296.508 kb on + strandat 296.508 kb on + strandat 296.508 kb on + strandat 296.508 kb on + strandat 296.508 kb on + strandat 296.509 kb on - strandat 296.509 kb on - strandat 296.568 kb on - strandat 296.593 kb on + strandat 296.594 kb on - strandat 296.594 kb on - strandat 296.594 kb on - strandat 296.629 kb on + strandat 296.630 kb on - strandat 296.630 kb on - strandat 296.630 kb on - strandat 296.630 kb on - strandat 296.851 kb on + strand, within Psyr_0279at 296.852 kb on - strand, within Psyr_0279at 296.852 kb on - strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.870 kb on + strand, within Psyr_0279at 296.871 kb on - strand, within Psyr_0279at 297.404 kb on + strandat 297.404 kb on + strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.405 kb on - strandat 297.407 kb on - strandat 297.464 kb on + strandat 297.464 kb on + strandat 297.464 kb on + strandat 297.464 kb on + strandat 297.464 kb on + strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.465 kb on - strandat 297.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 24 hours
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294,976 - -2.1
295,016 + +0.2
295,016 + -1.5
295,016 + -0.4
295,016 + -0.7
295,017 - -0.2
295,017 - -0.4
295,017 - -0.4
295,213 + Psyr_0277 0.27 +0.0
295,213 + Psyr_0277 0.27 -0.1
295,213 + Psyr_0277 0.27 -1.0
295,213 + Psyr_0277 0.27 -0.4
295,213 + Psyr_0277 0.27 -0.3
295,214 - Psyr_0277 0.27 +0.6
295,460 + Psyr_0277 0.58 -0.1
295,461 - Psyr_0277 0.58 +0.5
295,480 + Psyr_0277 0.61 -0.5
295,481 - Psyr_0277 0.61 -0.1
295,681 + Psyr_0277 0.86 +0.9
295,681 + Psyr_0277 0.86 -0.1
295,681 + Psyr_0277 0.86 +0.4
295,681 + Psyr_0277 0.86 +1.0
295,681 + Psyr_0277 0.86 +0.7
295,682 - Psyr_0277 0.86 -1.1
295,682 - Psyr_0277 0.86 +0.3
295,682 - Psyr_0277 0.86 -1.3
295,682 - Psyr_0277 0.86 -0.8
295,682 - Psyr_0277 0.86 -1.1
295,682 - Psyr_0277 0.86 +1.0
295,776 + -0.8
295,776 + -0.3
295,776 + -0.3
295,777 - -0.1
295,777 - -0.6
295,794 + -1.8
295,795 - -1.0
295,795 - -0.1
295,799 + +0.3
295,799 + -0.4
295,799 + -1.1
295,800 - +0.8
295,800 - +0.1
295,800 - -1.0
295,800 - -1.2
295,800 - +0.6
295,800 - -0.6
295,800 - +0.0
295,800 - +0.1
295,800 - +0.3
295,800 - -1.0
295,877 + Psyr_0278 0.12 -2.3
295,877 + Psyr_0278 0.12 -1.3
295,878 - Psyr_0278 0.12 -2.2
295,878 - Psyr_0278 0.12 -1.7
295,878 - Psyr_0278 0.12 -0.4
295,878 - Psyr_0278 0.12 -0.5
296,278 + Psyr_0278 0.63 -0.8
296,278 + Psyr_0278 0.63 +0.1
296,278 + Psyr_0278 0.63 -0.8
296,278 + Psyr_0278 0.63 -0.0
296,278 + Psyr_0278 0.63 -0.5
296,279 - Psyr_0278 0.63 +0.0
296,279 - Psyr_0278 0.63 -0.4
296,279 - Psyr_0278 0.63 -0.4
296,356 + Psyr_0278 0.73 -0.1
296,356 + Psyr_0278 0.73 -1.0
296,356 + Psyr_0278 0.73 -0.4
296,356 + Psyr_0278 0.73 -0.8
296,357 - Psyr_0278 0.73 -1.3
296,357 - Psyr_0278 0.73 -0.6
296,466 + Psyr_0278 0.87 -0.6
296,467 - Psyr_0278 0.87 -1.2
296,506 + -0.5
296,506 + -0.3
296,506 + +0.4
296,506 + -0.3
296,506 + -1.3
296,506 + -2.1
296,507 - -1.5
296,507 - -0.7
296,507 - -1.7
296,507 - -1.1
296,507 - +0.1
296,508 + +0.5
296,508 + -0.8
296,508 + +0.1
296,508 + -1.3
296,508 + -0.9
296,509 - +0.7
296,509 - -1.0
296,568 - +1.2
296,593 + -0.6
296,594 - -0.1
296,594 - -0.6
296,594 - +0.3
296,629 + -0.0
296,630 - +0.3
296,630 - -0.7
296,630 - +0.2
296,630 - -0.0
296,851 + Psyr_0279 0.34 -0.9
296,852 - Psyr_0279 0.34 +0.2
296,852 - Psyr_0279 0.34 +0.5
296,870 + Psyr_0279 0.37 +0.3
296,870 + Psyr_0279 0.37 +0.1
296,870 + Psyr_0279 0.37 +0.1
296,870 + Psyr_0279 0.37 +0.6
296,870 + Psyr_0279 0.37 +0.2
296,870 + Psyr_0279 0.37 -0.4
296,870 + Psyr_0279 0.37 -0.1
296,871 - Psyr_0279 0.37 +0.0
297,404 + +0.7
297,404 + -1.4
297,405 - -0.6
297,405 - +0.5
297,405 - -1.0
297,405 - +0.4
297,407 - +0.2
297,464 + +0.5
297,464 + -0.2
297,464 + +0.9
297,464 + -0.9
297,464 + +0.1
297,465 - -0.4
297,465 - -0.4
297,465 - +0.3
297,465 - -0.3
297,465 - -0.7
297,465 - +0.7

Or see this region's nucleotide sequence