Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5307

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5306 and Pf6N2E2_5307 overlap by 4 nucleotidesPf6N2E2_5307 and Pf6N2E2_5308 are separated by 129 nucleotides Pf6N2E2_5306 - Iron siderophore sensor protein, at 6,100,707 to 6,101,666 _5306 Pf6N2E2_5307 - FIG006045: Sigma factor, ECF subfamily, at 6,101,663 to 6,102,151 _5307 Pf6N2E2_5308 - Transcriptional regulator, AraC family, at 6,102,281 to 6,103,156 _5308 Position (kb) 6101 6102 6103Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6100.752 kb on + strandat 6100.753 kb on - strandat 6100.753 kb on - strandat 6100.920 kb on + strand, within Pf6N2E2_5306at 6100.920 kb on + strand, within Pf6N2E2_5306at 6100.920 kb on + strand, within Pf6N2E2_5306at 6100.921 kb on - strand, within Pf6N2E2_5306at 6100.921 kb on - strand, within Pf6N2E2_5306at 6101.100 kb on + strand, within Pf6N2E2_5306at 6101.100 kb on + strand, within Pf6N2E2_5306at 6101.100 kb on + strand, within Pf6N2E2_5306at 6101.100 kb on + strand, within Pf6N2E2_5306at 6101.100 kb on + strand, within Pf6N2E2_5306at 6101.101 kb on - strand, within Pf6N2E2_5306at 6101.148 kb on + strand, within Pf6N2E2_5306at 6101.149 kb on - strand, within Pf6N2E2_5306at 6101.149 kb on - strand, within Pf6N2E2_5306at 6101.149 kb on - strand, within Pf6N2E2_5306at 6101.149 kb on - strand, within Pf6N2E2_5306at 6101.149 kb on - strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.152 kb on + strand, within Pf6N2E2_5306at 6101.153 kb on - strand, within Pf6N2E2_5306at 6101.391 kb on + strand, within Pf6N2E2_5306at 6101.470 kb on - strand, within Pf6N2E2_5306at 6101.474 kb on + strand, within Pf6N2E2_5306at 6101.501 kb on + strand, within Pf6N2E2_5306at 6101.502 kb on - strand, within Pf6N2E2_5306at 6101.502 kb on - strand, within Pf6N2E2_5306at 6101.502 kb on - strand, within Pf6N2E2_5306at 6101.589 kb on + strandat 6101.589 kb on + strandat 6101.590 kb on - strandat 6101.590 kb on - strandat 6101.666 kb on + strandat 6101.667 kb on - strandat 6101.676 kb on + strandat 6101.676 kb on + strandat 6101.754 kb on + strand, within Pf6N2E2_5307at 6101.955 kb on - strand, within Pf6N2E2_5307at 6101.955 kb on - strand, within Pf6N2E2_5307at 6101.955 kb on - strand, within Pf6N2E2_5307at 6101.968 kb on + strand, within Pf6N2E2_5307at 6101.968 kb on + strand, within Pf6N2E2_5307at 6101.974 kb on + strand, within Pf6N2E2_5307at 6101.974 kb on + strand, within Pf6N2E2_5307at 6101.975 kb on - strand, within Pf6N2E2_5307at 6101.975 kb on - strand, within Pf6N2E2_5307at 6101.999 kb on - strand, within Pf6N2E2_5307at 6101.999 kb on - strand, within Pf6N2E2_5307at 6102.120 kb on + strandat 6102.121 kb on - strandat 6102.121 kb on - strandat 6102.121 kb on - strandat 6102.121 kb on - strandat 6102.121 kb on - strandat 6102.208 kb on + strandat 6102.222 kb on + strandat 6102.222 kb on + strandat 6102.222 kb on + strandat 6102.222 kb on + strandat 6102.223 kb on - strandat 6102.226 kb on + strandat 6102.303 kb on + strandat 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.453 kb on + strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.454 kb on - strand, within Pf6N2E2_5308at 6102.504 kb on + strand, within Pf6N2E2_5308at 6102.573 kb on + strand, within Pf6N2E2_5308at 6102.573 kb on + strand, within Pf6N2E2_5308at 6102.573 kb on + strand, within Pf6N2E2_5308at 6102.574 kb on - strand, within Pf6N2E2_5308at 6102.815 kb on + strand, within Pf6N2E2_5308at 6102.815 kb on + strand, within Pf6N2E2_5308at 6102.855 kb on + strand, within Pf6N2E2_5308at 6102.855 kb on + strand, within Pf6N2E2_5308at 6102.855 kb on + strand, within Pf6N2E2_5308at 6102.856 kb on - strand, within Pf6N2E2_5308at 6102.856 kb on - strand, within Pf6N2E2_5308at 6102.856 kb on - strand, within Pf6N2E2_5308at 6102.856 kb on - strand, within Pf6N2E2_5308at 6102.856 kb on - strand, within Pf6N2E2_5308at 6102.971 kb on - strand, within Pf6N2E2_5308at 6102.990 kb on + strand, within Pf6N2E2_5308at 6102.990 kb on + strand, within Pf6N2E2_5308at 6102.990 kb on + strand, within Pf6N2E2_5308at 6102.990 kb on + strand, within Pf6N2E2_5308at 6102.990 kb on + strand, within Pf6N2E2_5308at 6103.003 kb on + strand, within Pf6N2E2_5308at 6103.003 kb on + strand, within Pf6N2E2_5308at 6103.004 kb on - strand, within Pf6N2E2_5308at 6103.004 kb on - strand, within Pf6N2E2_5308at 6103.004 kb on - strand, within Pf6N2E2_5308at 6103.023 kb on + strand, within Pf6N2E2_5308at 6103.136 kb on + strandat 6103.136 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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6,100,752 + +0.2
6,100,753 - +2.3
6,100,753 - -1.7
6,100,920 + Pf6N2E2_5306 0.22 +1.3
6,100,920 + Pf6N2E2_5306 0.22 -0.8
6,100,920 + Pf6N2E2_5306 0.22 -0.3
6,100,921 - Pf6N2E2_5306 0.22 -0.0
6,100,921 - Pf6N2E2_5306 0.22 -1.0
6,101,100 + Pf6N2E2_5306 0.41 -3.0
6,101,100 + Pf6N2E2_5306 0.41 +0.4
6,101,100 + Pf6N2E2_5306 0.41 -1.4
6,101,100 + Pf6N2E2_5306 0.41 -1.3
6,101,100 + Pf6N2E2_5306 0.41 -0.9
6,101,101 - Pf6N2E2_5306 0.41 -0.8
6,101,148 + Pf6N2E2_5306 0.46 -1.7
6,101,149 - Pf6N2E2_5306 0.46 +0.1
6,101,149 - Pf6N2E2_5306 0.46 -0.7
6,101,149 - Pf6N2E2_5306 0.46 +0.2
6,101,149 - Pf6N2E2_5306 0.46 -0.7
6,101,149 - Pf6N2E2_5306 0.46 +0.1
6,101,152 + Pf6N2E2_5306 0.46 -0.3
6,101,152 + Pf6N2E2_5306 0.46 -1.1
6,101,152 + Pf6N2E2_5306 0.46 -1.7
6,101,152 + Pf6N2E2_5306 0.46 -1.4
6,101,152 + Pf6N2E2_5306 0.46 -0.6
6,101,152 + Pf6N2E2_5306 0.46 -0.9
6,101,152 + Pf6N2E2_5306 0.46 +0.1
6,101,152 + Pf6N2E2_5306 0.46 -1.8
6,101,153 - Pf6N2E2_5306 0.46 -2.0
6,101,391 + Pf6N2E2_5306 0.71 +0.7
6,101,470 - Pf6N2E2_5306 0.79 +0.7
6,101,474 + Pf6N2E2_5306 0.80 -0.7
6,101,501 + Pf6N2E2_5306 0.83 +0.1
6,101,502 - Pf6N2E2_5306 0.83 -1.4
6,101,502 - Pf6N2E2_5306 0.83 +0.4
6,101,502 - Pf6N2E2_5306 0.83 -0.7
6,101,589 + -2.4
6,101,589 + -0.4
6,101,590 - +1.5
6,101,590 - -2.7
6,101,666 + -0.7
6,101,667 - -1.8
6,101,676 + -0.7
6,101,676 + -0.4
6,101,754 + Pf6N2E2_5307 0.19 -1.3
6,101,955 - Pf6N2E2_5307 0.60 -0.7
6,101,955 - Pf6N2E2_5307 0.60 -1.5
6,101,955 - Pf6N2E2_5307 0.60 +0.0
6,101,968 + Pf6N2E2_5307 0.62 -2.5
6,101,968 + Pf6N2E2_5307 0.62 -1.6
6,101,974 + Pf6N2E2_5307 0.64 -1.6
6,101,974 + Pf6N2E2_5307 0.64 -1.8
6,101,975 - Pf6N2E2_5307 0.64 +0.1
6,101,975 - Pf6N2E2_5307 0.64 -2.6
6,101,999 - Pf6N2E2_5307 0.69 -2.5
6,101,999 - Pf6N2E2_5307 0.69 -1.5
6,102,120 + -1.9
6,102,121 - -2.2
6,102,121 - -2.1
6,102,121 - -0.8
6,102,121 - -1.1
6,102,121 - +0.5
6,102,208 + -0.1
6,102,222 + -2.2
6,102,222 + -2.1
6,102,222 + +1.0
6,102,222 + -4.1
6,102,223 - +0.0
6,102,226 + -0.5
6,102,303 + +0.6
6,102,453 + Pf6N2E2_5308 0.20 +1.4
6,102,453 + Pf6N2E2_5308 0.20 +0.9
6,102,453 + Pf6N2E2_5308 0.20 +0.9
6,102,453 + Pf6N2E2_5308 0.20 -0.3
6,102,453 + Pf6N2E2_5308 0.20 -0.3
6,102,453 + Pf6N2E2_5308 0.20 +0.3
6,102,453 + Pf6N2E2_5308 0.20 +0.7
6,102,453 + Pf6N2E2_5308 0.20 +0.5
6,102,453 + Pf6N2E2_5308 0.20 +0.5
6,102,453 + Pf6N2E2_5308 0.20 -1.7
6,102,453 + Pf6N2E2_5308 0.20 +1.7
6,102,453 + Pf6N2E2_5308 0.20 +0.1
6,102,453 + Pf6N2E2_5308 0.20 -0.6
6,102,453 + Pf6N2E2_5308 0.20 +0.2
6,102,453 + Pf6N2E2_5308 0.20 -0.3
6,102,454 - Pf6N2E2_5308 0.20 +0.1
6,102,454 - Pf6N2E2_5308 0.20 +0.6
6,102,454 - Pf6N2E2_5308 0.20 +0.2
6,102,454 - Pf6N2E2_5308 0.20 +0.6
6,102,454 - Pf6N2E2_5308 0.20 +0.8
6,102,454 - Pf6N2E2_5308 0.20 +1.0
6,102,454 - Pf6N2E2_5308 0.20 -0.2
6,102,454 - Pf6N2E2_5308 0.20 +1.1
6,102,454 - Pf6N2E2_5308 0.20 +0.5
6,102,454 - Pf6N2E2_5308 0.20 +0.4
6,102,454 - Pf6N2E2_5308 0.20 +0.7
6,102,454 - Pf6N2E2_5308 0.20 +0.4
6,102,454 - Pf6N2E2_5308 0.20 +0.3
6,102,454 - Pf6N2E2_5308 0.20 +0.1
6,102,504 + Pf6N2E2_5308 0.25 +0.0
6,102,573 + Pf6N2E2_5308 0.33 +0.0
6,102,573 + Pf6N2E2_5308 0.33 +0.2
6,102,573 + Pf6N2E2_5308 0.33 -0.7
6,102,574 - Pf6N2E2_5308 0.33 -0.7
6,102,815 + Pf6N2E2_5308 0.61 -0.3
6,102,815 + Pf6N2E2_5308 0.61 +0.0
6,102,855 + Pf6N2E2_5308 0.66 +0.1
6,102,855 + Pf6N2E2_5308 0.66 -0.9
6,102,855 + Pf6N2E2_5308 0.66 +0.2
6,102,856 - Pf6N2E2_5308 0.66 +0.2
6,102,856 - Pf6N2E2_5308 0.66 -0.1
6,102,856 - Pf6N2E2_5308 0.66 +0.2
6,102,856 - Pf6N2E2_5308 0.66 -0.6
6,102,856 - Pf6N2E2_5308 0.66 +0.6
6,102,971 - Pf6N2E2_5308 0.79 +0.5
6,102,990 + Pf6N2E2_5308 0.81 +0.2
6,102,990 + Pf6N2E2_5308 0.81 -0.3
6,102,990 + Pf6N2E2_5308 0.81 -1.2
6,102,990 + Pf6N2E2_5308 0.81 -0.3
6,102,990 + Pf6N2E2_5308 0.81 +0.0
6,103,003 + Pf6N2E2_5308 0.82 -0.1
6,103,003 + Pf6N2E2_5308 0.82 -1.8
6,103,004 - Pf6N2E2_5308 0.83 -0.7
6,103,004 - Pf6N2E2_5308 0.83 +0.5
6,103,004 - Pf6N2E2_5308 0.83 +1.0
6,103,023 + Pf6N2E2_5308 0.85 +1.1
6,103,136 + +0.6
6,103,136 + +0.1

Or see this region's nucleotide sequence