Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2852 and Pf6N2E2_2853 are separated by 196 nucleotides Pf6N2E2_2853 and Pf6N2E2_2854 are separated by 239 nucleotides
Pf6N2E2_2852 - GGDEF domain/EAL domain protein, at 3,342,536 to 3,344,587
_2852
Pf6N2E2_2853 - Iron-regulated protein A precursor, at 3,344,784 to 3,346,127
_2853
Pf6N2E2_2854 - RNA polymerase sigma-70 factor, ECF subfamily, at 3,346,367 to 3,347,602
_2854
Position (kb)
3344
3345
3346
3347 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3343.859 kb on + strand, within Pf6N2E2_2852 at 3343.859 kb on + strand, within Pf6N2E2_2852 at 3343.860 kb on - strand, within Pf6N2E2_2852 at 3343.860 kb on - strand, within Pf6N2E2_2852 at 3343.877 kb on + strand, within Pf6N2E2_2852 at 3344.300 kb on + strand, within Pf6N2E2_2852 at 3344.301 kb on - strand, within Pf6N2E2_2852 at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.468 kb on + strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.469 kb on - strand at 3344.504 kb on + strand at 3344.505 kb on - strand at 3344.505 kb on - strand at 3344.507 kb on + strand at 3344.507 kb on + strand at 3344.507 kb on + strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.508 kb on - strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.510 kb on + strand at 3344.511 kb on - strand at 3344.511 kb on - strand at 3344.511 kb on - strand at 3344.511 kb on - strand at 3344.511 kb on - strand at 3344.546 kb on + strand at 3344.546 kb on + strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.547 kb on - strand at 3344.632 kb on - strand at 3344.723 kb on - strand at 3344.828 kb on + strand at 3344.973 kb on + strand, within Pf6N2E2_2853 at 3344.973 kb on + strand, within Pf6N2E2_2853 at 3344.973 kb on + strand, within Pf6N2E2_2853 at 3344.974 kb on - strand, within Pf6N2E2_2853 at 3344.989 kb on - strand, within Pf6N2E2_2853 at 3344.989 kb on - strand, within Pf6N2E2_2853 at 3344.998 kb on - strand, within Pf6N2E2_2853 at 3345.213 kb on + strand, within Pf6N2E2_2853 at 3345.213 kb on + strand, within Pf6N2E2_2853 at 3345.214 kb on - strand, within Pf6N2E2_2853 at 3345.228 kb on + strand, within Pf6N2E2_2853 at 3345.313 kb on + strand, within Pf6N2E2_2853 at 3345.313 kb on + strand, within Pf6N2E2_2853 at 3345.313 kb on + strand, within Pf6N2E2_2853 at 3345.314 kb on - strand, within Pf6N2E2_2853 at 3345.314 kb on - strand, within Pf6N2E2_2853 at 3345.314 kb on - strand, within Pf6N2E2_2853 at 3345.314 kb on - strand, within Pf6N2E2_2853 at 3345.468 kb on + strand, within Pf6N2E2_2853 at 3345.468 kb on + strand, within Pf6N2E2_2853 at 3345.469 kb on - strand, within Pf6N2E2_2853 at 3345.519 kb on + strand, within Pf6N2E2_2853 at 3345.600 kb on + strand, within Pf6N2E2_2853 at 3345.601 kb on - strand, within Pf6N2E2_2853 at 3345.601 kb on - strand, within Pf6N2E2_2853 at 3345.601 kb on - strand, within Pf6N2E2_2853 at 3345.777 kb on + strand, within Pf6N2E2_2853 at 3345.778 kb on - strand, within Pf6N2E2_2853 at 3345.778 kb on - strand, within Pf6N2E2_2853 at 3345.804 kb on + strand, within Pf6N2E2_2853 at 3345.816 kb on + strand, within Pf6N2E2_2853 at 3345.816 kb on + strand, within Pf6N2E2_2853 at 3345.816 kb on + strand, within Pf6N2E2_2853 at 3345.816 kb on + strand, within Pf6N2E2_2853 at 3345.816 kb on + strand, within Pf6N2E2_2853 at 3345.817 kb on - strand, within Pf6N2E2_2853 at 3345.817 kb on - strand, within Pf6N2E2_2853 at 3345.972 kb on + strand, within Pf6N2E2_2853 at 3345.972 kb on + strand, within Pf6N2E2_2853 at 3345.972 kb on + strand, within Pf6N2E2_2853 at 3345.972 kb on + strand, within Pf6N2E2_2853 at 3345.973 kb on - strand, within Pf6N2E2_2853 at 3345.973 kb on - strand, within Pf6N2E2_2853 at 3346.198 kb on - strand at 3346.203 kb on + strand at 3346.203 kb on + strand at 3346.204 kb on - strand at 3346.204 kb on - strand at 3346.237 kb on - strand at 3346.237 kb on - strand at 3346.319 kb on + strand at 3346.320 kb on - strand at 3346.320 kb on - strand at 3346.396 kb on + strand at 3346.503 kb on + strand, within Pf6N2E2_2854 at 3346.516 kb on - strand, within Pf6N2E2_2854 at 3346.516 kb on - strand, within Pf6N2E2_2854 at 3346.524 kb on - strand, within Pf6N2E2_2854 at 3346.650 kb on + strand, within Pf6N2E2_2854 at 3347.031 kb on + strand, within Pf6N2E2_2854 at 3347.031 kb on + strand, within Pf6N2E2_2854 at 3347.031 kb on + strand, within Pf6N2E2_2854 at 3347.031 kb on + strand, within Pf6N2E2_2854 at 3347.031 kb on + strand, within Pf6N2E2_2854 at 3347.032 kb on - strand, within Pf6N2E2_2854 at 3347.032 kb on - strand, within Pf6N2E2_2854 at 3347.032 kb on - strand, within Pf6N2E2_2854 at 3347.032 kb on - strand, within Pf6N2E2_2854 at 3347.032 kb on - strand, within Pf6N2E2_2854 at 3347.091 kb on + strand, within Pf6N2E2_2854
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 3,343,859 + Pf6N2E2_2852 0.64 -1.9 3,343,859 + Pf6N2E2_2852 0.64 -0.5 3,343,860 - Pf6N2E2_2852 0.65 -0.4 3,343,860 - Pf6N2E2_2852 0.65 +0.1 3,343,877 + Pf6N2E2_2852 0.65 -0.5 3,344,300 + Pf6N2E2_2852 0.86 +0.1 3,344,301 - Pf6N2E2_2852 0.86 +1.3 3,344,468 + -1.8 3,344,468 + -2.1 3,344,468 + -0.6 3,344,468 + -0.7 3,344,468 + +0.1 3,344,468 + -0.2 3,344,468 + +0.2 3,344,469 - -1.4 3,344,469 - +0.1 3,344,469 - -0.8 3,344,469 - -0.6 3,344,469 - +0.0 3,344,469 - -2.0 3,344,469 - +0.3 3,344,504 + -0.6 3,344,505 - -0.1 3,344,505 - +0.6 3,344,507 + -0.2 3,344,507 + +0.8 3,344,507 + -0.4 3,344,508 - +0.0 3,344,508 - +0.0 3,344,508 - -0.7 3,344,508 - -1.4 3,344,508 - -1.0 3,344,508 - -0.6 3,344,508 - -1.2 3,344,508 - +0.1 3,344,508 - -0.7 3,344,508 - -0.0 3,344,510 + -1.4 3,344,510 + +0.4 3,344,510 + -0.4 3,344,510 + -0.3 3,344,510 + -0.5 3,344,510 + -0.5 3,344,510 + -0.1 3,344,510 + +0.3 3,344,511 - -0.4 3,344,511 - +0.2 3,344,511 - -3.1 3,344,511 - -1.3 3,344,511 - -0.8 3,344,546 + +1.3 3,344,546 + +0.4 3,344,547 - -0.1 3,344,547 - -0.3 3,344,547 - +1.3 3,344,547 - -0.2 3,344,547 - -1.0 3,344,547 - +0.1 3,344,547 - -1.2 3,344,632 - -1.5 3,344,723 - -3.0 3,344,828 + -3.9 3,344,973 + Pf6N2E2_2853 0.14 -1.2 3,344,973 + Pf6N2E2_2853 0.14 -2.3 3,344,973 + Pf6N2E2_2853 0.14 -1.4 3,344,974 - Pf6N2E2_2853 0.14 -0.0 3,344,989 - Pf6N2E2_2853 0.15 -4.0 3,344,989 - Pf6N2E2_2853 0.15 -2.5 3,344,998 - Pf6N2E2_2853 0.16 -3.1 3,345,213 + Pf6N2E2_2853 0.32 -3.3 3,345,213 + Pf6N2E2_2853 0.32 -2.0 3,345,214 - Pf6N2E2_2853 0.32 -2.7 3,345,228 + Pf6N2E2_2853 0.33 -0.4 3,345,313 + Pf6N2E2_2853 0.39 -2.5 3,345,313 + Pf6N2E2_2853 0.39 -4.0 3,345,313 + Pf6N2E2_2853 0.39 -0.1 3,345,314 - Pf6N2E2_2853 0.39 -1.8 3,345,314 - Pf6N2E2_2853 0.39 -1.0 3,345,314 - Pf6N2E2_2853 0.39 -2.0 3,345,314 - Pf6N2E2_2853 0.39 -3.8 3,345,468 + Pf6N2E2_2853 0.51 -1.4 3,345,468 + Pf6N2E2_2853 0.51 -1.4 3,345,469 - Pf6N2E2_2853 0.51 -0.9 3,345,519 + Pf6N2E2_2853 0.55 -2.7 3,345,600 + Pf6N2E2_2853 0.61 -2.1 3,345,601 - Pf6N2E2_2853 0.61 -2.4 3,345,601 - Pf6N2E2_2853 0.61 -0.8 3,345,601 - Pf6N2E2_2853 0.61 -2.3 3,345,777 + Pf6N2E2_2853 0.74 -1.9 3,345,778 - Pf6N2E2_2853 0.74 -1.5 3,345,778 - Pf6N2E2_2853 0.74 -2.0 3,345,804 + Pf6N2E2_2853 0.76 -0.5 3,345,816 + Pf6N2E2_2853 0.77 -1.6 3,345,816 + Pf6N2E2_2853 0.77 -1.8 3,345,816 + Pf6N2E2_2853 0.77 -2.8 3,345,816 + Pf6N2E2_2853 0.77 -2.3 3,345,816 + Pf6N2E2_2853 0.77 -1.5 3,345,817 - Pf6N2E2_2853 0.77 -3.3 3,345,817 - Pf6N2E2_2853 0.77 -2.3 3,345,972 + Pf6N2E2_2853 0.88 -3.9 3,345,972 + Pf6N2E2_2853 0.88 -3.0 3,345,972 + Pf6N2E2_2853 0.88 -0.9 3,345,972 + Pf6N2E2_2853 0.88 -2.8 3,345,973 - Pf6N2E2_2853 0.88 -3.5 3,345,973 - Pf6N2E2_2853 0.88 -1.5 3,346,198 - +0.8 3,346,203 + -0.1 3,346,203 + +0.1 3,346,204 - +0.1 3,346,204 - +1.5 3,346,237 - -0.4 3,346,237 - -0.4 3,346,319 + -0.2 3,346,320 - -1.1 3,346,320 - -0.7 3,346,396 + +0.2 3,346,503 + Pf6N2E2_2854 0.11 +0.2 3,346,516 - Pf6N2E2_2854 0.12 -0.6 3,346,516 - Pf6N2E2_2854 0.12 -0.5 3,346,524 - Pf6N2E2_2854 0.13 +0.2 3,346,650 + Pf6N2E2_2854 0.23 +0.5 3,347,031 + Pf6N2E2_2854 0.54 +1.1 3,347,031 + Pf6N2E2_2854 0.54 -0.5 3,347,031 + Pf6N2E2_2854 0.54 +0.2 3,347,031 + Pf6N2E2_2854 0.54 +0.3 3,347,031 + Pf6N2E2_2854 0.54 +0.2 3,347,032 - Pf6N2E2_2854 0.54 -0.0 3,347,032 - Pf6N2E2_2854 0.54 -1.1 3,347,032 - Pf6N2E2_2854 0.54 +0.1 3,347,032 - Pf6N2E2_2854 0.54 -0.7 3,347,032 - Pf6N2E2_2854 0.54 -0.5 3,347,091 + Pf6N2E2_2854 0.59 -1.6
Or see this region's nucleotide sequence