Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2853

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2852 and Pf6N2E2_2853 are separated by 196 nucleotidesPf6N2E2_2853 and Pf6N2E2_2854 are separated by 239 nucleotides Pf6N2E2_2852 - GGDEF domain/EAL domain protein, at 3,342,536 to 3,344,587 _2852 Pf6N2E2_2853 - Iron-regulated protein A precursor, at 3,344,784 to 3,346,127 _2853 Pf6N2E2_2854 - RNA polymerase sigma-70 factor, ECF subfamily, at 3,346,367 to 3,347,602 _2854 Position (kb) 3344 3345 3346 3347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3343.859 kb on + strand, within Pf6N2E2_2852at 3343.859 kb on + strand, within Pf6N2E2_2852at 3343.860 kb on - strand, within Pf6N2E2_2852at 3343.860 kb on - strand, within Pf6N2E2_2852at 3343.877 kb on + strand, within Pf6N2E2_2852at 3344.300 kb on + strand, within Pf6N2E2_2852at 3344.301 kb on - strand, within Pf6N2E2_2852at 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.468 kb on + strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.469 kb on - strandat 3344.504 kb on + strandat 3344.505 kb on - strandat 3344.505 kb on - strandat 3344.507 kb on + strandat 3344.507 kb on + strandat 3344.507 kb on + strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.508 kb on - strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.510 kb on + strandat 3344.511 kb on - strandat 3344.511 kb on - strandat 3344.511 kb on - strandat 3344.511 kb on - strandat 3344.511 kb on - strandat 3344.546 kb on + strandat 3344.546 kb on + strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.547 kb on - strandat 3344.632 kb on - strandat 3344.723 kb on - strandat 3344.828 kb on + strandat 3344.973 kb on + strand, within Pf6N2E2_2853at 3344.973 kb on + strand, within Pf6N2E2_2853at 3344.973 kb on + strand, within Pf6N2E2_2853at 3344.974 kb on - strand, within Pf6N2E2_2853at 3344.989 kb on - strand, within Pf6N2E2_2853at 3344.989 kb on - strand, within Pf6N2E2_2853at 3344.998 kb on - strand, within Pf6N2E2_2853at 3345.213 kb on + strand, within Pf6N2E2_2853at 3345.213 kb on + strand, within Pf6N2E2_2853at 3345.214 kb on - strand, within Pf6N2E2_2853at 3345.228 kb on + strand, within Pf6N2E2_2853at 3345.313 kb on + strand, within Pf6N2E2_2853at 3345.313 kb on + strand, within Pf6N2E2_2853at 3345.313 kb on + strand, within Pf6N2E2_2853at 3345.314 kb on - strand, within Pf6N2E2_2853at 3345.314 kb on - strand, within Pf6N2E2_2853at 3345.314 kb on - strand, within Pf6N2E2_2853at 3345.314 kb on - strand, within Pf6N2E2_2853at 3345.468 kb on + strand, within Pf6N2E2_2853at 3345.468 kb on + strand, within Pf6N2E2_2853at 3345.469 kb on - strand, within Pf6N2E2_2853at 3345.519 kb on + strand, within Pf6N2E2_2853at 3345.600 kb on + strand, within Pf6N2E2_2853at 3345.601 kb on - strand, within Pf6N2E2_2853at 3345.601 kb on - strand, within Pf6N2E2_2853at 3345.601 kb on - strand, within Pf6N2E2_2853at 3345.777 kb on + strand, within Pf6N2E2_2853at 3345.778 kb on - strand, within Pf6N2E2_2853at 3345.778 kb on - strand, within Pf6N2E2_2853at 3345.804 kb on + strand, within Pf6N2E2_2853at 3345.816 kb on + strand, within Pf6N2E2_2853at 3345.816 kb on + strand, within Pf6N2E2_2853at 3345.816 kb on + strand, within Pf6N2E2_2853at 3345.816 kb on + strand, within Pf6N2E2_2853at 3345.816 kb on + strand, within Pf6N2E2_2853at 3345.817 kb on - strand, within Pf6N2E2_2853at 3345.817 kb on - strand, within Pf6N2E2_2853at 3345.972 kb on + strand, within Pf6N2E2_2853at 3345.972 kb on + strand, within Pf6N2E2_2853at 3345.972 kb on + strand, within Pf6N2E2_2853at 3345.972 kb on + strand, within Pf6N2E2_2853at 3345.973 kb on - strand, within Pf6N2E2_2853at 3345.973 kb on - strand, within Pf6N2E2_2853at 3346.198 kb on - strandat 3346.203 kb on + strandat 3346.203 kb on + strandat 3346.204 kb on - strandat 3346.204 kb on - strandat 3346.237 kb on - strandat 3346.237 kb on - strandat 3346.319 kb on + strandat 3346.320 kb on - strandat 3346.320 kb on - strandat 3346.396 kb on + strandat 3346.503 kb on + strand, within Pf6N2E2_2854at 3346.516 kb on - strand, within Pf6N2E2_2854at 3346.516 kb on - strand, within Pf6N2E2_2854at 3346.524 kb on - strand, within Pf6N2E2_2854at 3346.650 kb on + strand, within Pf6N2E2_2854at 3347.031 kb on + strand, within Pf6N2E2_2854at 3347.031 kb on + strand, within Pf6N2E2_2854at 3347.031 kb on + strand, within Pf6N2E2_2854at 3347.031 kb on + strand, within Pf6N2E2_2854at 3347.031 kb on + strand, within Pf6N2E2_2854at 3347.032 kb on - strand, within Pf6N2E2_2854at 3347.032 kb on - strand, within Pf6N2E2_2854at 3347.032 kb on - strand, within Pf6N2E2_2854at 3347.032 kb on - strand, within Pf6N2E2_2854at 3347.032 kb on - strand, within Pf6N2E2_2854at 3347.091 kb on + strand, within Pf6N2E2_2854

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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3,343,859 + Pf6N2E2_2852 0.64 -1.9
3,343,859 + Pf6N2E2_2852 0.64 -0.5
3,343,860 - Pf6N2E2_2852 0.65 -0.4
3,343,860 - Pf6N2E2_2852 0.65 +0.1
3,343,877 + Pf6N2E2_2852 0.65 -0.5
3,344,300 + Pf6N2E2_2852 0.86 +0.1
3,344,301 - Pf6N2E2_2852 0.86 +1.3
3,344,468 + -1.8
3,344,468 + -2.1
3,344,468 + -0.6
3,344,468 + -0.7
3,344,468 + +0.1
3,344,468 + -0.2
3,344,468 + +0.2
3,344,469 - -1.4
3,344,469 - +0.1
3,344,469 - -0.8
3,344,469 - -0.6
3,344,469 - +0.0
3,344,469 - -2.0
3,344,469 - +0.3
3,344,504 + -0.6
3,344,505 - -0.1
3,344,505 - +0.6
3,344,507 + -0.2
3,344,507 + +0.8
3,344,507 + -0.4
3,344,508 - +0.0
3,344,508 - +0.0
3,344,508 - -0.7
3,344,508 - -1.4
3,344,508 - -1.0
3,344,508 - -0.6
3,344,508 - -1.2
3,344,508 - +0.1
3,344,508 - -0.7
3,344,508 - -0.0
3,344,510 + -1.4
3,344,510 + +0.4
3,344,510 + -0.4
3,344,510 + -0.3
3,344,510 + -0.5
3,344,510 + -0.5
3,344,510 + -0.1
3,344,510 + +0.3
3,344,511 - -0.4
3,344,511 - +0.2
3,344,511 - -3.1
3,344,511 - -1.3
3,344,511 - -0.8
3,344,546 + +1.3
3,344,546 + +0.4
3,344,547 - -0.1
3,344,547 - -0.3
3,344,547 - +1.3
3,344,547 - -0.2
3,344,547 - -1.0
3,344,547 - +0.1
3,344,547 - -1.2
3,344,632 - -1.5
3,344,723 - -3.0
3,344,828 + -3.9
3,344,973 + Pf6N2E2_2853 0.14 -1.2
3,344,973 + Pf6N2E2_2853 0.14 -2.3
3,344,973 + Pf6N2E2_2853 0.14 -1.4
3,344,974 - Pf6N2E2_2853 0.14 -0.0
3,344,989 - Pf6N2E2_2853 0.15 -4.0
3,344,989 - Pf6N2E2_2853 0.15 -2.5
3,344,998 - Pf6N2E2_2853 0.16 -3.1
3,345,213 + Pf6N2E2_2853 0.32 -3.3
3,345,213 + Pf6N2E2_2853 0.32 -2.0
3,345,214 - Pf6N2E2_2853 0.32 -2.7
3,345,228 + Pf6N2E2_2853 0.33 -0.4
3,345,313 + Pf6N2E2_2853 0.39 -2.5
3,345,313 + Pf6N2E2_2853 0.39 -4.0
3,345,313 + Pf6N2E2_2853 0.39 -0.1
3,345,314 - Pf6N2E2_2853 0.39 -1.8
3,345,314 - Pf6N2E2_2853 0.39 -1.0
3,345,314 - Pf6N2E2_2853 0.39 -2.0
3,345,314 - Pf6N2E2_2853 0.39 -3.8
3,345,468 + Pf6N2E2_2853 0.51 -1.4
3,345,468 + Pf6N2E2_2853 0.51 -1.4
3,345,469 - Pf6N2E2_2853 0.51 -0.9
3,345,519 + Pf6N2E2_2853 0.55 -2.7
3,345,600 + Pf6N2E2_2853 0.61 -2.1
3,345,601 - Pf6N2E2_2853 0.61 -2.4
3,345,601 - Pf6N2E2_2853 0.61 -0.8
3,345,601 - Pf6N2E2_2853 0.61 -2.3
3,345,777 + Pf6N2E2_2853 0.74 -1.9
3,345,778 - Pf6N2E2_2853 0.74 -1.5
3,345,778 - Pf6N2E2_2853 0.74 -2.0
3,345,804 + Pf6N2E2_2853 0.76 -0.5
3,345,816 + Pf6N2E2_2853 0.77 -1.6
3,345,816 + Pf6N2E2_2853 0.77 -1.8
3,345,816 + Pf6N2E2_2853 0.77 -2.8
3,345,816 + Pf6N2E2_2853 0.77 -2.3
3,345,816 + Pf6N2E2_2853 0.77 -1.5
3,345,817 - Pf6N2E2_2853 0.77 -3.3
3,345,817 - Pf6N2E2_2853 0.77 -2.3
3,345,972 + Pf6N2E2_2853 0.88 -3.9
3,345,972 + Pf6N2E2_2853 0.88 -3.0
3,345,972 + Pf6N2E2_2853 0.88 -0.9
3,345,972 + Pf6N2E2_2853 0.88 -2.8
3,345,973 - Pf6N2E2_2853 0.88 -3.5
3,345,973 - Pf6N2E2_2853 0.88 -1.5
3,346,198 - +0.8
3,346,203 + -0.1
3,346,203 + +0.1
3,346,204 - +0.1
3,346,204 - +1.5
3,346,237 - -0.4
3,346,237 - -0.4
3,346,319 + -0.2
3,346,320 - -1.1
3,346,320 - -0.7
3,346,396 + +0.2
3,346,503 + Pf6N2E2_2854 0.11 +0.2
3,346,516 - Pf6N2E2_2854 0.12 -0.6
3,346,516 - Pf6N2E2_2854 0.12 -0.5
3,346,524 - Pf6N2E2_2854 0.13 +0.2
3,346,650 + Pf6N2E2_2854 0.23 +0.5
3,347,031 + Pf6N2E2_2854 0.54 +1.1
3,347,031 + Pf6N2E2_2854 0.54 -0.5
3,347,031 + Pf6N2E2_2854 0.54 +0.2
3,347,031 + Pf6N2E2_2854 0.54 +0.3
3,347,031 + Pf6N2E2_2854 0.54 +0.2
3,347,032 - Pf6N2E2_2854 0.54 -0.0
3,347,032 - Pf6N2E2_2854 0.54 -1.1
3,347,032 - Pf6N2E2_2854 0.54 +0.1
3,347,032 - Pf6N2E2_2854 0.54 -0.7
3,347,032 - Pf6N2E2_2854 0.54 -0.5
3,347,091 + Pf6N2E2_2854 0.59 -1.6

Or see this region's nucleotide sequence