Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_914 and HP15_915 are separated by 12 nucleotides HP15_915 and HP15_916 are separated by 32 nucleotides HP15_916 and HP15_917 are separated by 38 nucleotides
HP15_914: HP15_914 - peptidoglycan-binding LysM, at 926,525 to 928,642
_914
HP15_915: HP15_915 - secreted protein containing sulphatase-modifying factor domain, at 928,655 to 929,614
_915
HP15_916: HP15_916 - membrane protein, at 929,647 to 930,522
_916
HP15_917: HP15_917 - hypothetical protein, at 930,561 to 930,668
_917
Position (kb) 928
929
930 Strain fitness (log2 ratio) -1
0
1
2 at 927.690 kb on + strand, within HP15_914 at 927.691 kb on - strand, within HP15_914 at 927.703 kb on + strand, within HP15_914 at 927.718 kb on + strand, within HP15_914 at 927.737 kb on - strand, within HP15_914 at 927.824 kb on - strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.931 kb on + strand, within HP15_914 at 927.956 kb on - strand, within HP15_914 at 928.059 kb on + strand, within HP15_914 at 928.188 kb on - strand, within HP15_914 at 928.306 kb on + strand, within HP15_914 at 928.666 kb on + strand at 928.839 kb on - strand, within HP15_915 at 929.142 kb on - strand, within HP15_915 at 929.184 kb on - strand, within HP15_915 at 929.235 kb on + strand, within HP15_915 at 929.348 kb on - strand, within HP15_915 at 929.446 kb on - strand, within HP15_915 at 929.649 kb on - strand at 929.869 kb on - strand, within HP15_916 at 930.118 kb on - strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.163 kb on + strand, within HP15_916 at 930.183 kb on + strand, within HP15_916 at 930.276 kb on + strand, within HP15_916 at 930.351 kb on - strand, within HP15_916 at 930.450 kb on + strand at 930.471 kb on - strand at 930.574 kb on - strand, within HP15_917 at 930.599 kb on - strand, within HP15_917 at 930.614 kb on - strand, within HP15_917
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 927,690 + HP15_914 0.55 +0.0 927,691 - HP15_914 0.55 +0.2 927,703 + HP15_914 0.56 +0.4 927,718 + HP15_914 0.56 +0.6 927,737 - HP15_914 0.57 +0.2 927,824 - HP15_914 0.61 -0.3 927,931 + HP15_914 0.66 -0.1 927,931 + HP15_914 0.66 +0.1 927,956 - HP15_914 0.68 +0.2 928,059 + HP15_914 0.72 +0.1 928,188 - HP15_914 0.79 -0.8 928,306 + HP15_914 0.84 +0.7 928,666 + -0.0 928,839 - HP15_915 0.19 -0.7 929,142 - HP15_915 0.51 +0.4 929,184 - HP15_915 0.55 +1.0 929,235 + HP15_915 0.60 +0.5 929,348 - HP15_915 0.72 +0.6 929,446 - HP15_915 0.82 +1.4 929,649 - -0.1 929,869 - HP15_916 0.25 -0.4 930,118 - HP15_916 0.54 -0.3 930,163 + HP15_916 0.59 -0.8 930,163 + HP15_916 0.59 +0.4 930,183 + HP15_916 0.61 +0.4 930,276 + HP15_916 0.72 -0.6 930,351 - HP15_916 0.80 +1.2 930,450 + +0.2 930,471 - +2.6 930,574 - HP15_917 0.12 -0.1 930,599 - HP15_917 0.35 -0.1 930,614 - HP15_917 0.49 -0.4
Or see this region's nucleotide sequence