Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_870 and HP15_871 are separated by 20 nucleotides HP15_871 and HP15_872 are separated by 60 nucleotides HP15_872 and HP15_873 are separated by 14 nucleotides HP15_873 and HP15_874 are separated by 50 nucleotides
HP15_870: HP15_870 - conserved hypothetical protein, membrane, at 889,971 to 890,444
_870
HP15_871: HP15_871 - NLP/P60 family protein, at 890,465 to 891,079
_871
HP15_872: HP15_872 - nitroreductase-like protein, at 891,140 to 892,168
_872
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1
2
3 at 890.155 kb on - strand, within HP15_870 at 890.250 kb on + strand, within HP15_870 at 890.451 kb on - strand at 890.564 kb on + strand, within HP15_871 at 890.669 kb on - strand, within HP15_871 at 890.707 kb on + strand, within HP15_871 at 890.744 kb on + strand, within HP15_871 at 890.835 kb on - strand, within HP15_871 at 890.858 kb on + strand, within HP15_871 at 890.955 kb on + strand, within HP15_871 at 890.965 kb on + strand, within HP15_871 at 890.973 kb on - strand, within HP15_871 at 891.103 kb on + strand at 891.132 kb on - strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.238 kb on - strand at 891.393 kb on - strand, within HP15_872 at 891.431 kb on - strand, within HP15_872 at 891.548 kb on - strand, within HP15_872 at 891.565 kb on - strand, within HP15_872 at 891.586 kb on + strand, within HP15_872 at 891.594 kb on - strand, within HP15_872 at 891.596 kb on + strand, within HP15_872 at 891.638 kb on - strand, within HP15_872 at 891.658 kb on + strand, within HP15_872 at 891.711 kb on + strand, within HP15_872 at 891.738 kb on + strand, within HP15_872 at 891.789 kb on + strand, within HP15_872 at 891.797 kb on - strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.879 kb on + strand, within HP15_872 at 891.881 kb on - strand, within HP15_872 at 891.892 kb on + strand, within HP15_872 at 892.055 kb on - strand, within HP15_872 at 892.175 kb on - strand at 892.176 kb on + strand at 892.176 kb on + strand at 892.184 kb on - strand at 892.184 kb on - strand at 892.189 kb on - strand at 892.214 kb on + strand at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 890,155 - HP15_870 0.39 -0.7 890,250 + HP15_870 0.59 +0.6 890,451 - -0.4 890,564 + HP15_871 0.16 +3.3 890,669 - HP15_871 0.33 +0.5 890,707 + HP15_871 0.39 -0.1 890,744 + HP15_871 0.45 -0.9 890,835 - HP15_871 0.60 +0.2 890,858 + HP15_871 0.64 +0.7 890,955 + HP15_871 0.80 -0.1 890,965 + HP15_871 0.81 -0.5 890,973 - HP15_871 0.83 -0.3 891,103 + +1.3 891,132 - -0.7 891,162 + +0.3 891,162 + +0.1 891,238 - -0.4 891,393 - HP15_872 0.25 -0.1 891,431 - HP15_872 0.28 +1.2 891,548 - HP15_872 0.40 +0.4 891,565 - HP15_872 0.41 -0.0 891,586 + HP15_872 0.43 +0.6 891,594 - HP15_872 0.44 +0.2 891,596 + HP15_872 0.44 +0.4 891,638 - HP15_872 0.48 +0.4 891,658 + HP15_872 0.50 +0.5 891,711 + HP15_872 0.55 +0.7 891,738 + HP15_872 0.58 +0.5 891,789 + HP15_872 0.63 -0.7 891,797 - HP15_872 0.64 +0.4 891,879 + HP15_872 0.72 -0.0 891,879 + HP15_872 0.72 -0.1 891,881 - HP15_872 0.72 +0.2 891,892 + HP15_872 0.73 +0.4 892,055 - HP15_872 0.89 +0.5 892,175 - -0.3 892,176 + -0.4 892,176 + -0.5 892,184 - -0.2 892,184 - +0.6 892,189 - +0.6 892,214 + -0.8 892,282 + HP15_873 0.26 +0.8 892,341 - HP15_873 0.41 +0.6 892,416 + HP15_873 0.61 +1.9 892,531 - +0.3 892,531 - -0.0 892,580 - +0.2 892,580 - -0.3 892,706 + HP15_874 0.16 +0.5 892,788 + HP15_874 0.31 +0.2 892,902 + HP15_874 0.51 -0.1 892,910 - HP15_874 0.52 -0.0 893,018 - HP15_874 0.71 -0.7 893,110 + HP15_874 0.87 -0.5
Or see this region's nucleotide sequence