Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_620 and HP15_tRNA12 are separated by 128 nucleotides HP15_tRNA12 and HP15_621 are separated by 146 nucleotides HP15_621 and HP15_622 are separated by 6 nucleotides HP15_622 and HP15_623 are separated by 15 nucleotides HP15_623 and HP15_624 are separated by 122 nucleotides
HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561
_620
HP15_tRNA12: HP15_tRNA12 - tRNA-Leu, at 645,690 to 645,776
_tRNA12
HP15_621: HP15_621 - hypothetical protein, at 645,923 to 646,156
_621
HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604
_622
HP15_623: HP15_623 - RNA methyltransferase, TrmH family, group 3, at 648,620 to 649,357
_623
HP15_624: HP15_624 - hypothetical protein, at 649,480 to 649,635
_624
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -1
0
1
2
3 at 645.220 kb on + strand, within HP15_620 at 645.221 kb on - strand, within HP15_620 at 645.325 kb on + strand, within HP15_620 at 645.333 kb on - strand, within HP15_620 at 645.343 kb on - strand, within HP15_620 at 645.454 kb on + strand at 645.611 kb on + strand at 645.618 kb on + strand at 645.628 kb on - strand at 645.904 kb on + strand at 645.958 kb on - strand, within HP15_621 at 645.980 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.995 kb on - strand, within HP15_621 at 646.020 kb on + strand, within HP15_621 at 646.191 kb on - strand at 646.195 kb on + strand at 646.300 kb on - strand at 646.359 kb on + strand at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.839 kb on + strand, within HP15_622 at 646.957 kb on - strand, within HP15_622 at 647.029 kb on + strand, within HP15_622 at 647.076 kb on - strand, within HP15_622 at 647.095 kb on + strand, within HP15_622 at 647.238 kb on + strand, within HP15_622 at 647.244 kb on - strand, within HP15_622 at 647.246 kb on - strand, within HP15_622 at 647.255 kb on - strand, within HP15_622 at 647.334 kb on + strand, within HP15_622 at 647.443 kb on - strand, within HP15_622 at 647.448 kb on - strand, within HP15_622 at 647.539 kb on + strand, within HP15_622 at 647.547 kb on - strand, within HP15_622 at 647.565 kb on - strand, within HP15_622 at 647.616 kb on + strand, within HP15_622 at 647.624 kb on + strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.624 kb on - strand, within HP15_622 at 647.626 kb on + strand, within HP15_622 at 647.632 kb on - strand, within HP15_622 at 647.680 kb on + strand, within HP15_622 at 647.697 kb on - strand, within HP15_622 at 647.752 kb on - strand, within HP15_622 at 648.022 kb on - strand, within HP15_622 at 648.336 kb on - strand, within HP15_622 at 648.382 kb on - strand at 648.694 kb on + strand, within HP15_623 at 648.727 kb on + strand, within HP15_623 at 648.958 kb on - strand, within HP15_623 at 649.014 kb on - strand, within HP15_623 at 649.291 kb on - strand at 649.301 kb on - strand at 649.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 645,220 + HP15_620 0.82 -0.2 645,221 - HP15_620 0.82 -1.4 645,325 + HP15_620 0.87 -0.5 645,333 - HP15_620 0.88 +1.1 645,343 - HP15_620 0.88 -1.0 645,454 + +0.3 645,611 + +0.5 645,618 + -1.1 645,628 - +1.1 645,904 + -0.2 645,958 - HP15_621 0.15 -0.0 645,980 + HP15_621 0.24 +2.8 645,982 + HP15_621 0.25 +0.7 645,982 + HP15_621 0.25 -0.6 645,990 - HP15_621 0.29 +0.9 645,990 - HP15_621 0.29 +0.2 645,990 - HP15_621 0.29 +1.6 645,990 - HP15_621 0.29 +0.8 645,995 - HP15_621 0.31 +0.9 646,020 + HP15_621 0.41 -0.7 646,191 - +0.3 646,195 + +0.3 646,300 - +0.7 646,359 + +0.4 646,571 - HP15_622 0.17 +0.5 646,571 - HP15_622 0.17 +0.6 646,571 - HP15_622 0.17 +0.4 646,839 + HP15_622 0.28 +1.0 646,957 - HP15_622 0.33 +0.6 647,029 + HP15_622 0.35 +0.1 647,076 - HP15_622 0.37 +0.9 647,095 + HP15_622 0.38 +0.4 647,238 + HP15_622 0.44 +1.3 647,244 - HP15_622 0.44 +0.7 647,246 - HP15_622 0.44 +0.7 647,255 - HP15_622 0.45 +0.2 647,334 + HP15_622 0.48 +0.2 647,443 - HP15_622 0.52 +0.6 647,448 - HP15_622 0.53 -0.4 647,539 + HP15_622 0.56 +0.2 647,547 - HP15_622 0.57 +0.9 647,565 - HP15_622 0.57 -0.3 647,616 + HP15_622 0.60 +0.2 647,624 + HP15_622 0.60 +1.2 647,624 - HP15_622 0.60 +1.5 647,624 - HP15_622 0.60 +0.3 647,626 + HP15_622 0.60 -0.0 647,632 - HP15_622 0.60 +0.2 647,680 + HP15_622 0.62 -0.0 647,697 - HP15_622 0.63 +0.9 647,752 - HP15_622 0.65 -0.1 648,022 - HP15_622 0.76 +0.1 648,336 - HP15_622 0.89 -0.5 648,382 - +0.8 648,694 + HP15_623 0.10 +0.4 648,727 + HP15_623 0.14 -1.3 648,958 - HP15_623 0.46 +0.9 649,014 - HP15_623 0.53 +0.5 649,291 - -0.2 649,301 - +0.2 649,358 + -0.4
Or see this region's nucleotide sequence