Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_620 and HP15_tRNA12 are separated by 128 nucleotides HP15_tRNA12 and HP15_621 are separated by 146 nucleotides HP15_621 and HP15_622 are separated by 6 nucleotides
HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561
_620
HP15_tRNA12: HP15_tRNA12 - tRNA-Leu, at 645,690 to 645,776
_tRNA12
HP15_621: HP15_621 - hypothetical protein, at 645,923 to 646,156
_621
HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604
_622
Position (kb) 645
646
647 Strain fitness (log2 ratio) -1
0
1
2
3 at 644.950 kb on + strand, within HP15_620 at 644.970 kb on - strand, within HP15_620 at 644.972 kb on + strand, within HP15_620 at 644.972 kb on + strand, within HP15_620 at 644.980 kb on - strand, within HP15_620 at 645.000 kb on + strand, within HP15_620 at 645.036 kb on - strand, within HP15_620 at 645.074 kb on + strand, within HP15_620 at 645.092 kb on - strand, within HP15_620 at 645.100 kb on + strand, within HP15_620 at 645.101 kb on - strand, within HP15_620 at 645.220 kb on + strand, within HP15_620 at 645.221 kb on - strand, within HP15_620 at 645.325 kb on + strand, within HP15_620 at 645.333 kb on - strand, within HP15_620 at 645.343 kb on - strand, within HP15_620 at 645.454 kb on + strand at 645.611 kb on + strand at 645.618 kb on + strand at 645.628 kb on - strand at 645.904 kb on + strand at 645.958 kb on - strand, within HP15_621 at 645.980 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.982 kb on + strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.990 kb on - strand, within HP15_621 at 645.995 kb on - strand, within HP15_621 at 646.020 kb on + strand, within HP15_621 at 646.191 kb on - strand at 646.195 kb on + strand at 646.300 kb on - strand at 646.359 kb on + strand at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.571 kb on - strand, within HP15_622 at 646.839 kb on + strand, within HP15_622 at 646.957 kb on - strand, within HP15_622 at 647.029 kb on + strand, within HP15_622 at 647.076 kb on - strand, within HP15_622 at 647.095 kb on + strand, within HP15_622
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 644,950 + HP15_620 0.68 +0.0 644,970 - HP15_620 0.69 +0.2 644,972 + HP15_620 0.69 -1.0 644,972 + HP15_620 0.69 -0.2 644,980 - HP15_620 0.69 -0.9 645,000 + HP15_620 0.70 +1.6 645,036 - HP15_620 0.72 +0.0 645,074 + HP15_620 0.74 +0.2 645,092 - HP15_620 0.75 +0.6 645,100 + HP15_620 0.75 +0.4 645,101 - HP15_620 0.76 +0.2 645,220 + HP15_620 0.82 -0.2 645,221 - HP15_620 0.82 -1.4 645,325 + HP15_620 0.87 -0.5 645,333 - HP15_620 0.88 +1.1 645,343 - HP15_620 0.88 -1.0 645,454 + +0.3 645,611 + +0.5 645,618 + -1.1 645,628 - +1.1 645,904 + -0.2 645,958 - HP15_621 0.15 -0.0 645,980 + HP15_621 0.24 +2.8 645,982 + HP15_621 0.25 +0.7 645,982 + HP15_621 0.25 -0.6 645,990 - HP15_621 0.29 +0.9 645,990 - HP15_621 0.29 +0.2 645,990 - HP15_621 0.29 +1.6 645,990 - HP15_621 0.29 +0.8 645,995 - HP15_621 0.31 +0.9 646,020 + HP15_621 0.41 -0.7 646,191 - +0.3 646,195 + +0.3 646,300 - +0.7 646,359 + +0.4 646,571 - HP15_622 0.17 +0.5 646,571 - HP15_622 0.17 +0.6 646,571 - HP15_622 0.17 +0.4 646,839 + HP15_622 0.28 +1.0 646,957 - HP15_622 0.33 +0.6 647,029 + HP15_622 0.35 +0.1 647,076 - HP15_622 0.37 +0.9 647,095 + HP15_622 0.38 +0.4
Or see this region's nucleotide sequence