Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g13 and HP15_p42g14 are separated by 101 nucleotides HP15_p42g14 and HP15_p42g15 are separated by 144 nucleotides
HP15_p42g13: HP15_p42g13 - ParB-like partition protein, at 8,221 to 9,246
_p42g13
HP15_p42g14: HP15_p42g14 - hypothetical protein, at 9,348 to 9,470
_p42g14
HP15_p42g15: HP15_p42g15 - KfrA protein, at 9,615 to 10,646
_p42g15
Position (kb)
9
10 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 9.268 kb on - strand at 9.308 kb on - strand at 9.318 kb on - strand at 9.365 kb on - strand, within HP15_p42g14 at 9.410 kb on - strand, within HP15_p42g14 at 9.452 kb on + strand, within HP15_p42g14 at 9.483 kb on + strand at 9.491 kb on - strand at 9.494 kb on + strand at 9.494 kb on + strand at 9.499 kb on + strand at 9.499 kb on + strand at 9.542 kb on + strand at 9.695 kb on + strand at 9.702 kb on + strand at 9.702 kb on + strand at 9.702 kb on + strand at 9.710 kb on - strand at 9.710 kb on - strand at 9.710 kb on - strand at 9.731 kb on - strand, within HP15_p42g15 at 9.758 kb on + strand, within HP15_p42g15 at 9.780 kb on - strand, within HP15_p42g15 at 9.827 kb on + strand, within HP15_p42g15 at 9.828 kb on - strand, within HP15_p42g15 at 9.852 kb on + strand, within HP15_p42g15 at 9.903 kb on - strand, within HP15_p42g15 at 10.014 kb on + strand, within HP15_p42g15 at 10.043 kb on + strand, within HP15_p42g15 at 10.066 kb on - strand, within HP15_p42g15 at 10.145 kb on - strand, within HP15_p42g15 at 10.189 kb on + strand, within HP15_p42g15 at 10.199 kb on - strand, within HP15_p42g15 at 10.244 kb on + strand, within HP15_p42g15 at 10.253 kb on - strand, within HP15_p42g15 at 10.298 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 9,268 - +0.5 9,308 - -0.6 9,318 - +0.9 9,365 - HP15_p42g14 0.14 -2.1 9,410 - HP15_p42g14 0.50 +0.2 9,452 + HP15_p42g14 0.85 -1.9 9,483 + +0.4 9,491 - -1.4 9,494 + +0.0 9,494 + -0.7 9,499 + -1.0 9,499 + +0.3 9,542 + +2.0 9,695 + +3.8 9,702 + +3.2 9,702 + +3.8 9,702 + +2.9 9,710 - +0.1 9,710 - -1.5 9,710 - +1.3 9,731 - HP15_p42g15 0.11 -1.1 9,758 + HP15_p42g15 0.14 +3.3 9,780 - HP15_p42g15 0.16 -0.1 9,827 + HP15_p42g15 0.21 +3.1 9,828 - HP15_p42g15 0.21 -0.1 9,852 + HP15_p42g15 0.23 +3.2 9,903 - HP15_p42g15 0.28 -0.1 10,014 + HP15_p42g15 0.39 +2.9 10,043 + HP15_p42g15 0.41 +3.2 10,066 - HP15_p42g15 0.44 +0.3 10,145 - HP15_p42g15 0.51 -0.1 10,189 + HP15_p42g15 0.56 +0.8 10,199 - HP15_p42g15 0.57 -0.1 10,244 + HP15_p42g15 0.61 +4.2 10,253 - HP15_p42g15 0.62 +0.0 10,298 + HP15_p42g15 0.66 +3.3 10,412 + HP15_p42g15 0.77 +2.3 10,412 + HP15_p42g15 0.77 +2.6
Or see this region's nucleotide sequence