Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4043 and HP15_4044 are separated by 69 nucleotides HP15_4044 and HP15_4045 are separated by 10 nucleotides HP15_4045 and HP15_4046 overlap by 17 nucleotides HP15_4046 and HP15_4047 overlap by 4 nucleotides
HP15_4043: HP15_4043 - 4-hydroxybenzoyl-CoA thioesterase, at 4,278,077 to 4,278,523
_4043
HP15_4044: HP15_4044 - ThiJ/PfpI family protein, at 4,278,593 to 4,279,294
_4044
HP15_4045: HP15_4045 - hypothetical protein, at 4,279,305 to 4,279,433
_4045
HP15_4046: HP15_4046 - extracellular solute-binding protein, family 3, at 4,279,417 to 4,280,220
_4046
HP15_4047: HP15_4047 - metallo-beta-lactamase family protein, at 4,280,217 to 4,281,599
_4047
Position (kb) 4279
4280 Strain fitness (log2 ratio) -1
0
1 at 4278.311 kb on - strand, within HP15_4043 at 4278.345 kb on + strand, within HP15_4043 at 4278.348 kb on - strand, within HP15_4043 at 4278.412 kb on - strand, within HP15_4043 at 4278.591 kb on + strand at 4278.607 kb on - strand at 4278.607 kb on - strand at 4278.628 kb on - strand at 4278.634 kb on + strand at 4278.701 kb on - strand, within HP15_4044 at 4278.701 kb on - strand, within HP15_4044 at 4278.757 kb on + strand, within HP15_4044 at 4278.767 kb on + strand, within HP15_4044 at 4278.811 kb on - strand, within HP15_4044 at 4278.865 kb on + strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.873 kb on - strand, within HP15_4044 at 4278.915 kb on + strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4278.923 kb on - strand, within HP15_4044 at 4279.021 kb on + strand, within HP15_4044 at 4279.088 kb on - strand, within HP15_4044 at 4279.098 kb on - strand, within HP15_4044 at 4279.109 kb on + strand, within HP15_4044 at 4279.127 kb on - strand, within HP15_4044 at 4279.151 kb on + strand, within HP15_4044 at 4279.278 kb on - strand at 4279.343 kb on - strand, within HP15_4045 at 4279.426 kb on + strand at 4279.489 kb on + strand at 4279.498 kb on + strand, within HP15_4046 at 4279.527 kb on - strand, within HP15_4046 at 4279.561 kb on - strand, within HP15_4046 at 4279.606 kb on - strand, within HP15_4046 at 4279.608 kb on - strand, within HP15_4046 at 4279.624 kb on - strand, within HP15_4046 at 4279.624 kb on - strand, within HP15_4046 at 4279.743 kb on + strand, within HP15_4046 at 4279.743 kb on + strand, within HP15_4046 at 4279.751 kb on - strand, within HP15_4046 at 4279.850 kb on + strand, within HP15_4046 at 4280.011 kb on - strand, within HP15_4046 at 4280.184 kb on - strand at 4280.221 kb on + strand at 4280.221 kb on + strand at 4280.238 kb on - strand at 4280.263 kb on - strand at 4280.361 kb on + strand, within HP15_4047 at 4280.381 kb on - strand, within HP15_4047 at 4280.381 kb on - strand, within HP15_4047 at 4280.381 kb on - strand, within HP15_4047
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,278,311 - HP15_4043 0.52 -1.1 4,278,345 + HP15_4043 0.60 -1.3 4,278,348 - HP15_4043 0.61 +0.0 4,278,412 - HP15_4043 0.75 -0.6 4,278,591 + +0.7 4,278,607 - -1.0 4,278,607 - -0.1 4,278,628 - -0.8 4,278,634 + -0.0 4,278,701 - HP15_4044 0.15 -1.0 4,278,701 - HP15_4044 0.15 -1.1 4,278,757 + HP15_4044 0.23 +0.7 4,278,767 + HP15_4044 0.25 +0.5 4,278,811 - HP15_4044 0.31 +0.1 4,278,865 + HP15_4044 0.39 +1.7 4,278,873 - HP15_4044 0.40 +1.0 4,278,873 - HP15_4044 0.40 -0.3 4,278,915 + HP15_4044 0.46 +0.4 4,278,923 - HP15_4044 0.47 -0.3 4,278,923 - HP15_4044 0.47 -0.4 4,279,021 + HP15_4044 0.61 -1.7 4,279,088 - HP15_4044 0.71 +0.7 4,279,098 - HP15_4044 0.72 +0.7 4,279,109 + HP15_4044 0.74 +0.7 4,279,127 - HP15_4044 0.76 +0.3 4,279,151 + HP15_4044 0.79 -0.3 4,279,278 - +0.7 4,279,343 - HP15_4045 0.29 +0.5 4,279,426 + +0.4 4,279,489 + +0.2 4,279,498 + HP15_4046 0.10 -0.3 4,279,527 - HP15_4046 0.14 -0.0 4,279,561 - HP15_4046 0.18 -1.1 4,279,606 - HP15_4046 0.24 +0.2 4,279,608 - HP15_4046 0.24 +0.4 4,279,624 - HP15_4046 0.26 +0.0 4,279,624 - HP15_4046 0.26 -0.2 4,279,743 + HP15_4046 0.41 +0.5 4,279,743 + HP15_4046 0.41 +1.3 4,279,751 - HP15_4046 0.42 -0.2 4,279,850 + HP15_4046 0.54 -0.5 4,280,011 - HP15_4046 0.74 -0.2 4,280,184 - +0.6 4,280,221 + +0.8 4,280,221 + -0.1 4,280,238 - +0.4 4,280,263 - +0.2 4,280,361 + HP15_4047 0.10 +0.2 4,280,381 - HP15_4047 0.12 +0.3 4,280,381 - HP15_4047 0.12 +0.1 4,280,381 - HP15_4047 0.12 +0.6
Or see this region's nucleotide sequence