Strain Fitness in Marinobacter adhaerens HP15 around HP15_3784

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3783 and HP15_3784 are separated by 3 nucleotidesHP15_3784 and HP15_3785 are separated by 225 nucleotides HP15_3783: HP15_3783 - RimK domain protein ATP-grasp, at 4,005,200 to 4,006,024 _3783 HP15_3784: HP15_3784 - hypothetical protein, at 4,006,028 to 4,006,240 _3784 HP15_3785: HP15_3785 - ornithine decarboxylase, at 4,006,466 to 4,007,641 _3785 Position (kb) 4006 4007Strain fitness (log2 ratio) -1 0 1 2at 4005.097 kb on - strandat 4005.112 kb on + strandat 4005.181 kb on + strandat 4005.181 kb on + strandat 4005.181 kb on + strandat 4005.189 kb on - strandat 4005.189 kb on - strandat 4005.208 kb on - strandat 4005.208 kb on - strandat 4005.255 kb on + strandat 4005.267 kb on + strandat 4005.306 kb on - strand, within HP15_3783at 4005.559 kb on + strand, within HP15_3783at 4005.593 kb on + strand, within HP15_3783at 4005.618 kb on + strand, within HP15_3783at 4005.776 kb on - strand, within HP15_3783at 4005.828 kb on - strand, within HP15_3783at 4005.865 kb on + strand, within HP15_3783at 4005.873 kb on - strand, within HP15_3783at 4005.933 kb on - strand, within HP15_3783at 4005.933 kb on - strand, within HP15_3783at 4006.069 kb on + strand, within HP15_3784at 4006.133 kb on - strand, within HP15_3784at 4006.297 kb on + strandat 4006.350 kb on - strandat 4006.392 kb on + strandat 4006.392 kb on + strandat 4006.445 kb on - strandat 4006.450 kb on - strandat 4006.466 kb on - strandat 4006.575 kb on - strandat 4006.614 kb on - strand, within HP15_3785at 4006.632 kb on - strand, within HP15_3785at 4006.661 kb on + strand, within HP15_3785at 4006.666 kb on + strand, within HP15_3785at 4006.730 kb on - strand, within HP15_3785at 4006.734 kb on - strand, within HP15_3785at 4006.798 kb on + strand, within HP15_3785at 4006.903 kb on - strand, within HP15_3785at 4006.921 kb on + strand, within HP15_3785at 4007.003 kb on - strand, within HP15_3785at 4007.022 kb on - strand, within HP15_3785at 4007.048 kb on - strand, within HP15_3785at 4007.075 kb on + strand, within HP15_3785at 4007.083 kb on - strand, within HP15_3785at 4007.093 kb on - strand, within HP15_3785at 4007.197 kb on + strand, within HP15_3785at 4007.206 kb on - strand, within HP15_3785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,005,097 - +0.1
4,005,112 + -0.0
4,005,181 + +0.6
4,005,181 + +0.3
4,005,181 + +0.2
4,005,189 - +0.6
4,005,189 - +0.6
4,005,208 - +0.2
4,005,208 - -0.3
4,005,255 + -0.7
4,005,267 + +0.4
4,005,306 - HP15_3783 0.13 +0.4
4,005,559 + HP15_3783 0.44 +1.6
4,005,593 + HP15_3783 0.48 +0.1
4,005,618 + HP15_3783 0.51 +0.4
4,005,776 - HP15_3783 0.70 -0.5
4,005,828 - HP15_3783 0.76 -0.0
4,005,865 + HP15_3783 0.81 -0.4
4,005,873 - HP15_3783 0.82 +0.2
4,005,933 - HP15_3783 0.89 +1.8
4,005,933 - HP15_3783 0.89 -0.5
4,006,069 + HP15_3784 0.19 +0.9
4,006,133 - HP15_3784 0.49 +0.3
4,006,297 + -1.2
4,006,350 - +1.5
4,006,392 + +0.4
4,006,392 + +2.1
4,006,445 - -0.3
4,006,450 - +0.9
4,006,466 - -0.3
4,006,575 - -0.0
4,006,614 - HP15_3785 0.13 -0.2
4,006,632 - HP15_3785 0.14 +0.2
4,006,661 + HP15_3785 0.17 +0.8
4,006,666 + HP15_3785 0.17 -0.8
4,006,730 - HP15_3785 0.22 +0.2
4,006,734 - HP15_3785 0.23 -0.2
4,006,798 + HP15_3785 0.28 -0.2
4,006,903 - HP15_3785 0.37 -0.3
4,006,921 + HP15_3785 0.39 +0.5
4,007,003 - HP15_3785 0.46 -1.1
4,007,022 - HP15_3785 0.47 +1.3
4,007,048 - HP15_3785 0.49 -0.2
4,007,075 + HP15_3785 0.52 +1.5
4,007,083 - HP15_3785 0.52 +0.2
4,007,093 - HP15_3785 0.53 +0.4
4,007,197 + HP15_3785 0.62 +0.3
4,007,206 - HP15_3785 0.63 +0.6

Or see this region's nucleotide sequence