Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3527 and HP15_3528 are separated by 19 nucleotides HP15_3528 and HP15_3529 are separated by 49 nucleotides HP15_3529 and HP15_3530 are separated by 24 nucleotides
HP15_3527: HP15_3527 - GGDEF family protein, at 3,714,463 to 3,715,530
_3527
HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617
_3528
HP15_3529: HP15_3529 - GTP cyclohydrolase 1, at 3,716,667 to 3,717,236
_3529
HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635
_3530
Position (kb)
3715
3716
3717 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3714.734 kb on - strand, within HP15_3527 at 3714.739 kb on - strand, within HP15_3527 at 3714.753 kb on - strand, within HP15_3527 at 3714.758 kb on - strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.779 kb on - strand, within HP15_3527 at 3714.796 kb on + strand, within HP15_3527 at 3714.864 kb on - strand, within HP15_3527 at 3714.990 kb on - strand, within HP15_3527 at 3715.026 kb on - strand, within HP15_3527 at 3715.118 kb on + strand, within HP15_3527 at 3715.119 kb on + strand, within HP15_3527 at 3715.157 kb on + strand, within HP15_3527 at 3715.201 kb on - strand, within HP15_3527 at 3715.240 kb on - strand, within HP15_3527 at 3715.355 kb on + strand, within HP15_3527 at 3715.388 kb on - strand, within HP15_3527 at 3715.389 kb on - strand, within HP15_3527 at 3715.394 kb on - strand, within HP15_3527 at 3715.503 kb on + strand at 3715.503 kb on + strand at 3715.504 kb on - strand at 3715.506 kb on - strand at 3715.584 kb on - strand at 3715.612 kb on + strand at 3715.656 kb on - strand at 3715.666 kb on + strand, within HP15_3528 at 3715.743 kb on + strand, within HP15_3528 at 3715.751 kb on - strand, within HP15_3528 at 3715.781 kb on + strand, within HP15_3528 at 3715.839 kb on + strand, within HP15_3528 at 3715.931 kb on + strand, within HP15_3528 at 3715.939 kb on - strand, within HP15_3528 at 3716.122 kb on + strand, within HP15_3528 at 3716.140 kb on - strand, within HP15_3528 at 3716.146 kb on + strand, within HP15_3528 at 3716.159 kb on - strand, within HP15_3528 at 3716.162 kb on + strand, within HP15_3528 at 3716.217 kb on - strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.410 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.459 kb on + strand, within HP15_3528 at 3716.484 kb on - strand, within HP15_3528 at 3716.528 kb on + strand at 3716.534 kb on + strand at 3716.599 kb on + strand at 3716.638 kb on + strand at 3716.748 kb on + strand, within HP15_3529 at 3716.778 kb on + strand, within HP15_3529 at 3716.784 kb on - strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.980 kb on - strand, within HP15_3529 at 3717.051 kb on + strand, within HP15_3529 at 3717.099 kb on + strand, within HP15_3529 at 3717.240 kb on + strand at 3717.384 kb on - strand, within HP15_3530 at 3717.386 kb on + strand, within HP15_3530 at 3717.405 kb on + strand, within HP15_3530 at 3717.406 kb on + strand, within HP15_3530 at 3717.432 kb on + strand, within HP15_3530 at 3717.487 kb on + strand, within HP15_3530 at 3717.503 kb on - strand, within HP15_3530 at 3717.505 kb on - strand, within HP15_3530 at 3717.512 kb on - strand, within HP15_3530 at 3717.518 kb on - strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.563 kb on + strand, within HP15_3530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,714,734 - HP15_3527 0.25 -1.2 3,714,739 - HP15_3527 0.26 +0.2 3,714,753 - HP15_3527 0.27 +0.1 3,714,758 - HP15_3527 0.28 -0.1 3,714,771 + HP15_3527 0.29 -0.0 3,714,771 + HP15_3527 0.29 +0.1 3,714,779 - HP15_3527 0.30 -0.1 3,714,796 + HP15_3527 0.31 -0.8 3,714,864 - HP15_3527 0.38 +0.4 3,714,990 - HP15_3527 0.49 +0.5 3,715,026 - HP15_3527 0.53 -0.8 3,715,118 + HP15_3527 0.61 -0.4 3,715,119 + HP15_3527 0.61 +0.3 3,715,157 + HP15_3527 0.65 -0.5 3,715,201 - HP15_3527 0.69 -1.0 3,715,240 - HP15_3527 0.73 +0.3 3,715,355 + HP15_3527 0.84 +0.3 3,715,388 - HP15_3527 0.87 +0.3 3,715,389 - HP15_3527 0.87 -0.1 3,715,394 - HP15_3527 0.87 +0.2 3,715,503 + +0.1 3,715,503 + +0.1 3,715,504 - +0.4 3,715,506 - +0.5 3,715,584 - +0.7 3,715,612 + +1.0 3,715,656 - +0.4 3,715,666 + HP15_3528 0.11 +0.8 3,715,743 + HP15_3528 0.18 -0.0 3,715,751 - HP15_3528 0.19 +0.1 3,715,781 + HP15_3528 0.22 -0.3 3,715,839 + HP15_3528 0.27 -0.2 3,715,931 + HP15_3528 0.36 +1.4 3,715,939 - HP15_3528 0.36 -0.0 3,716,122 + HP15_3528 0.54 +1.4 3,716,140 - HP15_3528 0.55 -0.2 3,716,146 + HP15_3528 0.56 +0.3 3,716,159 - HP15_3528 0.57 +0.0 3,716,162 + HP15_3528 0.57 -0.0 3,716,217 - HP15_3528 0.62 +1.1 3,716,404 + HP15_3528 0.80 -0.2 3,716,404 + HP15_3528 0.80 -0.4 3,716,404 + HP15_3528 0.80 +0.8 3,716,410 - HP15_3528 0.81 +0.5 3,716,412 - HP15_3528 0.81 -0.4 3,716,412 - HP15_3528 0.81 +0.2 3,716,412 - HP15_3528 0.81 +0.3 3,716,412 - HP15_3528 0.81 +0.4 3,716,459 + HP15_3528 0.85 +2.0 3,716,484 - HP15_3528 0.87 -0.3 3,716,528 + +0.8 3,716,534 + +0.9 3,716,599 + -0.2 3,716,638 + -0.1 3,716,748 + HP15_3529 0.14 -0.5 3,716,778 + HP15_3529 0.19 -1.5 3,716,784 - HP15_3529 0.21 -1.4 3,716,961 + HP15_3529 0.52 -1.6 3,716,961 + HP15_3529 0.52 -2.1 3,716,969 - HP15_3529 0.53 -1.4 3,716,969 - HP15_3529 0.53 -2.4 3,716,980 - HP15_3529 0.55 -1.8 3,717,051 + HP15_3529 0.67 -2.4 3,717,099 + HP15_3529 0.76 -1.5 3,717,240 + -1.3 3,717,384 - HP15_3530 0.33 +0.3 3,717,386 + HP15_3530 0.33 +0.0 3,717,405 + HP15_3530 0.38 +0.2 3,717,406 + HP15_3530 0.39 -0.5 3,717,432 + HP15_3530 0.46 +0.5 3,717,487 + HP15_3530 0.60 +0.2 3,717,503 - HP15_3530 0.65 -1.0 3,717,505 - HP15_3530 0.65 +0.2 3,717,512 - HP15_3530 0.67 -0.3 3,717,518 - HP15_3530 0.69 +0.1 3,717,519 + HP15_3530 0.69 +1.3 3,717,519 + HP15_3530 0.69 -0.1 3,717,519 + HP15_3530 0.69 -0.1 3,717,519 + HP15_3530 0.69 +2.3 3,717,519 + HP15_3530 0.69 +0.5 3,717,527 - HP15_3530 0.71 +0.3 3,717,527 - HP15_3530 0.71 +0.1 3,717,527 - HP15_3530 0.71 -0.2 3,717,527 - HP15_3530 0.71 +0.4 3,717,563 + HP15_3530 0.81 +0.5
Or see this region's nucleotide sequence