Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3342 and HP15_3343 are separated by 173 nucleotides HP15_3343 and HP15_3344 are separated by 89 nucleotides HP15_3344 and HP15_3345 are separated by 207 nucleotides
HP15_3342: HP15_3342 - pyridoxal-dependent decarboxylase, at 3,502,851 to 3,504,527
_3342
HP15_3343: HP15_3343 - conserved hypothetical protein, at 3,504,701 to 3,504,967
_3343
HP15_3344: HP15_3344 - phosphate transporter family protein, at 3,505,057 to 3,506,616
_3344
HP15_3345: HP15_3345 - GGDEF domain protein, at 3,506,824 to 3,507,927
_3345
Position (kb)
3505
3506
3507 Strain fitness (log2 ratio)
-1
0
1
2 at 3504.523 kb on + strand at 3504.530 kb on - strand at 3504.645 kb on + strand at 3504.696 kb on - strand at 3504.894 kb on + strand, within HP15_3343 at 3504.989 kb on + strand at 3504.989 kb on + strand at 3505.121 kb on - strand at 3505.208 kb on + strand at 3505.208 kb on + strand at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.216 kb on - strand, within HP15_3344 at 3505.343 kb on + strand, within HP15_3344 at 3505.432 kb on + strand, within HP15_3344 at 3505.457 kb on + strand, within HP15_3344 at 3505.490 kb on + strand, within HP15_3344 at 3505.504 kb on + strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.507 kb on - strand, within HP15_3344 at 3505.548 kb on + strand, within HP15_3344 at 3505.575 kb on + strand, within HP15_3344 at 3505.589 kb on - strand, within HP15_3344 at 3505.674 kb on + strand, within HP15_3344 at 3505.712 kb on + strand, within HP15_3344 at 3505.747 kb on + strand, within HP15_3344 at 3505.817 kb on - strand, within HP15_3344 at 3505.898 kb on + strand, within HP15_3344 at 3506.099 kb on + strand, within HP15_3344 at 3506.271 kb on - strand, within HP15_3344 at 3506.473 kb on - strand at 3506.586 kb on - strand at 3506.586 kb on - strand at 3506.586 kb on - strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.611 kb on + strand at 3506.619 kb on - strand at 3506.631 kb on + strand at 3506.726 kb on + strand at 3506.976 kb on - strand, within HP15_3345 at 3507.007 kb on + strand, within HP15_3345 at 3507.092 kb on - strand, within HP15_3345 at 3507.093 kb on - strand, within HP15_3345 at 3507.221 kb on + strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.375 kb on - strand, within HP15_3345 at 3507.400 kb on + strand, within HP15_3345 at 3507.455 kb on - strand, within HP15_3345 at 3507.500 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.515 kb on + strand, within HP15_3345 at 3507.523 kb on - strand, within HP15_3345 at 3507.525 kb on + strand, within HP15_3345
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,504,523 + +0.5 3,504,530 - +0.3 3,504,645 + -0.6 3,504,696 - +0.2 3,504,894 + HP15_3343 0.72 -0.3 3,504,989 + -0.1 3,504,989 + +0.0 3,505,121 - +1.6 3,505,208 + +1.2 3,505,208 + +1.9 3,505,216 - HP15_3344 0.10 +1.3 3,505,216 - HP15_3344 0.10 +0.7 3,505,216 - HP15_3344 0.10 +1.1 3,505,343 + HP15_3344 0.18 +1.3 3,505,432 + HP15_3344 0.24 +1.2 3,505,457 + HP15_3344 0.26 +0.9 3,505,490 + HP15_3344 0.28 +1.3 3,505,504 + HP15_3344 0.29 +1.8 3,505,507 - HP15_3344 0.29 +2.1 3,505,507 - HP15_3344 0.29 +1.4 3,505,548 + HP15_3344 0.31 +0.9 3,505,575 + HP15_3344 0.33 +1.1 3,505,589 - HP15_3344 0.34 +0.7 3,505,674 + HP15_3344 0.40 +0.5 3,505,712 + HP15_3344 0.42 +1.3 3,505,747 + HP15_3344 0.44 +1.9 3,505,817 - HP15_3344 0.49 +1.0 3,505,898 + HP15_3344 0.54 +2.2 3,506,099 + HP15_3344 0.67 +2.3 3,506,271 - HP15_3344 0.78 +2.0 3,506,473 - +1.4 3,506,586 - +2.2 3,506,586 - +2.1 3,506,586 - +1.3 3,506,611 + +1.6 3,506,611 + +2.1 3,506,611 + +1.2 3,506,611 + +2.3 3,506,619 - +1.1 3,506,631 + -0.8 3,506,726 + +1.1 3,506,976 - HP15_3345 0.14 -0.2 3,507,007 + HP15_3345 0.17 -0.2 3,507,092 - HP15_3345 0.24 +0.2 3,507,093 - HP15_3345 0.24 -0.1 3,507,221 + HP15_3345 0.36 +1.3 3,507,258 - HP15_3345 0.39 -0.4 3,507,258 - HP15_3345 0.39 +0.2 3,507,301 + HP15_3345 0.43 +0.7 3,507,301 + HP15_3345 0.43 +0.2 3,507,309 - HP15_3345 0.44 -0.2 3,507,309 - HP15_3345 0.44 -0.6 3,507,309 - HP15_3345 0.44 +0.5 3,507,375 - HP15_3345 0.50 +0.1 3,507,400 + HP15_3345 0.52 +0.1 3,507,455 - HP15_3345 0.57 +0.2 3,507,500 + HP15_3345 0.61 +0.6 3,507,505 + HP15_3345 0.62 -0.4 3,507,505 + HP15_3345 0.62 -0.9 3,507,515 + HP15_3345 0.63 +0.3 3,507,523 - HP15_3345 0.63 -0.0 3,507,525 + HP15_3345 0.63 +0.3
Or see this region's nucleotide sequence