Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3188 and HP15_3189 are separated by 83 nucleotides HP15_3189 and HP15_3190 are separated by 20 nucleotides HP15_3190 and HP15_3191 are separated by 125 nucleotides HP15_3191 and HP15_3192 overlap by 1 nucleotides
HP15_3188: HP15_3188 - conserved hypothetical protein, at 3,344,160 to 3,345,083
_3188
HP15_3189: HP15_3189 - conserved hypothetical protein, at 3,345,167 to 3,345,916
_3189
HP15_3190: HP15_3190 - polyhydroxyalkanoic acid system protein, at 3,345,937 to 3,346,215
_3190
HP15_3191: HP15_3191 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE, at 3,346,341 to 3,347,132
_3191
HP15_3192: HP15_3192 - protein containing sterol-binding domain, at 3,347,132 to 3,347,773
_3192
Position (kb)
3345
3346
3347 Strain fitness (log2 ratio)
-1
0
1 at 3344.949 kb on + strand, within HP15_3188 at 3345.016 kb on + strand at 3345.077 kb on + strand at 3345.085 kb on - strand at 3345.110 kb on - strand at 3345.121 kb on + strand at 3345.144 kb on - strand at 3345.146 kb on + strand at 3345.166 kb on + strand at 3345.191 kb on + strand at 3345.199 kb on - strand at 3345.383 kb on + strand, within HP15_3189 at 3345.402 kb on - strand, within HP15_3189 at 3345.479 kb on - strand, within HP15_3189 at 3345.567 kb on + strand, within HP15_3189 at 3345.648 kb on + strand, within HP15_3189 at 3345.694 kb on + strand, within HP15_3189 at 3345.769 kb on - strand, within HP15_3189 at 3345.784 kb on + strand, within HP15_3189 at 3345.851 kb on - strand at 3345.876 kb on + strand at 3345.910 kb on + strand at 3345.910 kb on + strand at 3345.934 kb on + strand at 3345.942 kb on - strand at 3346.070 kb on + strand, within HP15_3190 at 3346.070 kb on - strand, within HP15_3190 at 3346.090 kb on - strand, within HP15_3190 at 3346.143 kb on - strand, within HP15_3190 at 3346.176 kb on + strand, within HP15_3190 at 3346.269 kb on - strand at 3346.279 kb on + strand at 3347.152 kb on + strand at 3347.171 kb on + strand at 3347.173 kb on + strand at 3347.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,344,949 + HP15_3188 0.85 -0.5 3,345,016 + -0.2 3,345,077 + -0.1 3,345,085 - +0.9 3,345,110 - -0.2 3,345,121 + +0.1 3,345,144 - +0.5 3,345,146 + +0.3 3,345,166 + +0.3 3,345,191 + +0.5 3,345,199 - +0.0 3,345,383 + HP15_3189 0.29 -0.3 3,345,402 - HP15_3189 0.31 -0.1 3,345,479 - HP15_3189 0.42 +0.3 3,345,567 + HP15_3189 0.53 +0.7 3,345,648 + HP15_3189 0.64 +0.4 3,345,694 + HP15_3189 0.70 -0.3 3,345,769 - HP15_3189 0.80 +0.4 3,345,784 + HP15_3189 0.82 -0.4 3,345,851 - -0.2 3,345,876 + -0.2 3,345,910 + +0.3 3,345,910 + +0.6 3,345,934 + +0.2 3,345,942 - -0.3 3,346,070 + HP15_3190 0.48 +1.1 3,346,070 - HP15_3190 0.48 -0.3 3,346,090 - HP15_3190 0.55 +0.1 3,346,143 - HP15_3190 0.74 +0.7 3,346,176 + HP15_3190 0.86 -0.0 3,346,269 - -0.4 3,346,279 + +0.7 3,347,152 + +0.1 3,347,171 + -0.3 3,347,173 + -0.4 3,347,181 - -0.5
Or see this region's nucleotide sequence