Strain Fitness in Marinobacter adhaerens HP15 around HP15_2867

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2866 and HP15_2867 are separated by 278 nucleotidesHP15_2867 and HP15_2868 are separated by 71 nucleotidesHP15_2868 and HP15_2869 are separated by 192 nucleotides HP15_2866: HP15_2866 - hypothetical protein, at 3,003,555 to 3,004,622 _2866 HP15_2867: HP15_2867 - HypX, at 3,004,901 to 3,006,841 _2867 HP15_2868: HP15_2868 - hypothetical protein, at 3,006,913 to 3,007,047 _2868 HP15_2869: HP15_2869 - HupE/UreJ protein, at 3,007,240 to 3,007,815 _2869 Position (kb) 3004 3005 3006 3007Strain fitness (log2 ratio) -1 0 1 2 3 4at 3003.945 kb on - strand, within HP15_2866at 3003.962 kb on - strand, within HP15_2866at 3004.124 kb on + strand, within HP15_2866at 3004.124 kb on + strand, within HP15_2866at 3004.137 kb on + strand, within HP15_2866at 3004.147 kb on - strand, within HP15_2866at 3004.164 kb on + strand, within HP15_2866at 3004.164 kb on + strand, within HP15_2866at 3004.174 kb on + strand, within HP15_2866at 3004.249 kb on - strand, within HP15_2866at 3004.474 kb on + strand, within HP15_2866at 3004.482 kb on - strand, within HP15_2866at 3004.526 kb on - strandat 3004.534 kb on - strandat 3005.078 kb on - strandat 3005.285 kb on + strand, within HP15_2867at 3005.347 kb on + strand, within HP15_2867at 3005.355 kb on - strand, within HP15_2867at 3005.355 kb on - strand, within HP15_2867at 3005.355 kb on - strand, within HP15_2867at 3005.355 kb on - strand, within HP15_2867at 3005.614 kb on + strand, within HP15_2867at 3005.685 kb on - strand, within HP15_2867at 3005.700 kb on - strand, within HP15_2867at 3005.828 kb on + strand, within HP15_2867at 3005.899 kb on + strand, within HP15_2867at 3006.035 kb on + strand, within HP15_2867at 3006.439 kb on + strand, within HP15_2867at 3006.528 kb on + strand, within HP15_2867at 3006.544 kb on + strand, within HP15_2867at 3006.656 kb on - strandat 3006.671 kb on - strandat 3006.689 kb on - strandat 3006.753 kb on + strandat 3006.753 kb on + strandat 3006.761 kb on - strandat 3006.847 kb on + strandat 3006.847 kb on + strandat 3006.855 kb on - strandat 3006.946 kb on - strand, within HP15_2868at 3006.982 kb on + strand, within HP15_2868at 3007.005 kb on - strand, within HP15_2868at 3007.034 kb on + strandat 3007.085 kb on + strandat 3007.099 kb on - strandat 3007.157 kb on + strandat 3007.367 kb on + strand, within HP15_2869at 3007.383 kb on + strand, within HP15_2869at 3007.425 kb on + strand, within HP15_2869at 3007.433 kb on + strand, within HP15_2869at 3007.468 kb on + strand, within HP15_2869at 3007.550 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.627 kb on + strand, within HP15_2869at 3007.652 kb on + strand, within HP15_2869at 3007.750 kb on + strand, within HP15_2869at 3007.772 kb on + strandat 3007.787 kb on - strandat 3007.797 kb on - strandat 3007.797 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
3,003,945 - HP15_2866 0.37 -0.4
3,003,962 - HP15_2866 0.38 -0.1
3,004,124 + HP15_2866 0.53 -0.2
3,004,124 + HP15_2866 0.53 -0.2
3,004,137 + HP15_2866 0.54 -0.1
3,004,147 - HP15_2866 0.55 -0.6
3,004,164 + HP15_2866 0.57 +0.0
3,004,164 + HP15_2866 0.57 +0.2
3,004,174 + HP15_2866 0.58 +0.9
3,004,249 - HP15_2866 0.65 -0.3
3,004,474 + HP15_2866 0.86 +0.1
3,004,482 - HP15_2866 0.87 -0.0
3,004,526 - +1.0
3,004,534 - -0.2
3,005,078 - -0.7
3,005,285 + HP15_2867 0.20 +4.3
3,005,347 + HP15_2867 0.23 +0.7
3,005,355 - HP15_2867 0.23 +0.0
3,005,355 - HP15_2867 0.23 +0.2
3,005,355 - HP15_2867 0.23 +0.9
3,005,355 - HP15_2867 0.23 -0.1
3,005,614 + HP15_2867 0.37 +1.1
3,005,685 - HP15_2867 0.40 -0.0
3,005,700 - HP15_2867 0.41 +0.2
3,005,828 + HP15_2867 0.48 +0.0
3,005,899 + HP15_2867 0.51 +0.7
3,006,035 + HP15_2867 0.58 +0.2
3,006,439 + HP15_2867 0.79 -0.1
3,006,528 + HP15_2867 0.84 -0.1
3,006,544 + HP15_2867 0.85 +0.8
3,006,656 - -1.2
3,006,671 - +1.1
3,006,689 - +0.3
3,006,753 + -0.8
3,006,753 + -0.1
3,006,761 - -0.0
3,006,847 + +0.3
3,006,847 + -0.2
3,006,855 - -0.3
3,006,946 - HP15_2868 0.24 -0.0
3,006,982 + HP15_2868 0.51 +0.7
3,007,005 - HP15_2868 0.68 +0.2
3,007,034 + -0.1
3,007,085 + +0.4
3,007,099 - -0.0
3,007,157 + +0.4
3,007,367 + HP15_2869 0.22 +0.5
3,007,383 + HP15_2869 0.25 -0.2
3,007,425 + HP15_2869 0.32 -0.5
3,007,433 + HP15_2869 0.34 -0.5
3,007,468 + HP15_2869 0.40 +1.2
3,007,550 - HP15_2869 0.54 -0.1
3,007,565 - HP15_2869 0.56 +0.7
3,007,565 - HP15_2869 0.56 -0.2
3,007,565 - HP15_2869 0.56 +0.8
3,007,627 + HP15_2869 0.67 -0.2
3,007,652 + HP15_2869 0.72 +0.1
3,007,750 + HP15_2869 0.89 +2.7
3,007,772 + +0.7
3,007,787 - +0.1
3,007,797 - -0.2
3,007,797 - -0.1

Or see this region's nucleotide sequence