Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2841 and HP15_2842 are separated by 218 nucleotides HP15_2842 and HP15_2843 are separated by 430 nucleotides HP15_2843 and HP15_2844 are separated by 121 nucleotides
HP15_2841: HP15_2841 - conserved hypothetical protein, secreted, at 2,982,695 to 2,984,290
_2841
HP15_2842: HP15_2842 - transcriptional regulatory protein, at 2,984,509 to 2,985,225
_2842
HP15_2843: HP15_2843 - YHS domain protein, at 2,985,656 to 2,986,099
_2843
HP15_2844: HP15_2844 - hypothetical protein, at 2,986,221 to 2,986,388
_2844
Position (kb)
2984
2985
2986 Strain fitness (log2 ratio)
-2
-1
0
1 at 2983.735 kb on - strand, within HP15_2841 at 2983.760 kb on - strand, within HP15_2841 at 2983.764 kb on + strand, within HP15_2841 at 2983.769 kb on + strand, within HP15_2841 at 2983.788 kb on + strand, within HP15_2841 at 2983.796 kb on - strand, within HP15_2841 at 2983.942 kb on + strand, within HP15_2841 at 2983.942 kb on + strand, within HP15_2841 at 2983.950 kb on - strand, within HP15_2841 at 2983.950 kb on - strand, within HP15_2841 at 2983.961 kb on + strand, within HP15_2841 at 2983.969 kb on - strand, within HP15_2841 at 2983.969 kb on - strand, within HP15_2841 at 2984.064 kb on - strand, within HP15_2841 at 2984.134 kb on + strand at 2984.134 kb on + strand at 2984.137 kb on - strand at 2984.157 kb on - strand at 2984.180 kb on - strand at 2984.195 kb on + strand at 2984.203 kb on - strand at 2984.228 kb on - strand at 2984.296 kb on - strand at 2984.304 kb on - strand at 2984.312 kb on + strand at 2984.362 kb on - strand at 2984.411 kb on - strand at 2984.568 kb on - strand at 2984.678 kb on + strand, within HP15_2842 at 2984.686 kb on - strand, within HP15_2842 at 2985.017 kb on - strand, within HP15_2842 at 2985.025 kb on + strand, within HP15_2842 at 2985.033 kb on - strand, within HP15_2842 at 2985.033 kb on - strand, within HP15_2842 at 2985.286 kb on - strand at 2985.288 kb on - strand at 2985.350 kb on + strand at 2985.364 kb on + strand at 2985.364 kb on + strand at 2985.389 kb on - strand at 2985.425 kb on + strand at 2985.534 kb on - strand at 2985.539 kb on - strand at 2985.593 kb on + strand at 2985.609 kb on + strand at 2985.714 kb on - strand, within HP15_2843 at 2985.750 kb on + strand, within HP15_2843 at 2985.753 kb on - strand, within HP15_2843 at 2985.825 kb on + strand, within HP15_2843 at 2985.833 kb on - strand, within HP15_2843 at 2985.843 kb on - strand, within HP15_2843 at 2985.847 kb on - strand, within HP15_2843 at 2985.968 kb on + strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.976 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2985.981 kb on - strand, within HP15_2843 at 2986.030 kb on - strand, within HP15_2843 at 2986.072 kb on + strand at 2986.096 kb on - strand at 2986.214 kb on - strand at 2986.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,983,735 - HP15_2841 0.65 +0.4 2,983,760 - HP15_2841 0.67 -0.1 2,983,764 + HP15_2841 0.67 +0.3 2,983,769 + HP15_2841 0.67 +0.1 2,983,788 + HP15_2841 0.68 -0.1 2,983,796 - HP15_2841 0.69 -0.4 2,983,942 + HP15_2841 0.78 +1.6 2,983,942 + HP15_2841 0.78 -0.6 2,983,950 - HP15_2841 0.79 +0.8 2,983,950 - HP15_2841 0.79 +0.3 2,983,961 + HP15_2841 0.79 -0.5 2,983,969 - HP15_2841 0.80 +0.5 2,983,969 - HP15_2841 0.80 -0.1 2,984,064 - HP15_2841 0.86 +0.3 2,984,134 + -0.1 2,984,134 + -0.5 2,984,137 - +0.3 2,984,157 - +0.6 2,984,180 - -0.1 2,984,195 + +0.8 2,984,203 - +0.2 2,984,228 - +0.8 2,984,296 - +0.1 2,984,304 - -0.4 2,984,312 + +0.1 2,984,362 - +0.3 2,984,411 - -0.1 2,984,568 - +0.2 2,984,678 + HP15_2842 0.24 -0.4 2,984,686 - HP15_2842 0.25 +1.1 2,985,017 - HP15_2842 0.71 -0.3 2,985,025 + HP15_2842 0.72 -1.7 2,985,033 - HP15_2842 0.73 -0.1 2,985,033 - HP15_2842 0.73 -1.0 2,985,286 - -1.9 2,985,288 - +0.2 2,985,350 + +0.5 2,985,364 + +0.2 2,985,364 + +0.2 2,985,389 - +0.0 2,985,425 + -0.0 2,985,534 - -0.2 2,985,539 - -0.1 2,985,593 + -0.9 2,985,609 + +0.2 2,985,714 - HP15_2843 0.13 +0.2 2,985,750 + HP15_2843 0.21 +0.1 2,985,753 - HP15_2843 0.22 +0.6 2,985,825 + HP15_2843 0.38 +0.5 2,985,833 - HP15_2843 0.40 +0.1 2,985,843 - HP15_2843 0.42 +0.2 2,985,847 - HP15_2843 0.43 +0.6 2,985,968 + HP15_2843 0.70 -0.6 2,985,976 - HP15_2843 0.72 -0.3 2,985,976 - HP15_2843 0.72 +0.3 2,985,981 - HP15_2843 0.73 -0.9 2,985,981 - HP15_2843 0.73 +0.0 2,985,981 - HP15_2843 0.73 -0.6 2,986,030 - HP15_2843 0.84 -1.0 2,986,072 + +0.3 2,986,096 - +1.0 2,986,214 - -0.1 2,986,214 - +0.8
Or see this region's nucleotide sequence