Strain Fitness in Marinobacter adhaerens HP15 around HP15_2705

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2703 and HP15_2704 are separated by 17 nucleotidesHP15_2704 and HP15_2705 overlap by 4 nucleotidesHP15_2705 and HP15_2706 overlap by 1 nucleotidesHP15_2706 and HP15_2707 are separated by 82 nucleotides HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354 _2703 HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130 _2704 HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134 _2705 HP15_2706: HP15_2706 - inner-membrane translocator, at 2,859,134 to 2,860,009 _2706 HP15_2707: HP15_2707 - extracellular ligand-binding receptor, at 2,860,092 to 2,861,249 _2707 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -1 0 1at 2857.131 kb on - strand, within HP15_2703at 2857.230 kb on - strandat 2857.326 kb on + strandat 2857.568 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.664 kb on + strand, within HP15_2704at 2857.672 kb on - strand, within HP15_2704at 2857.788 kb on - strand, within HP15_2704at 2857.795 kb on - strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.967 kb on + strand, within HP15_2704at 2857.977 kb on - strand, within HP15_2704at 2857.986 kb on + strand, within HP15_2704at 2858.030 kb on + strand, within HP15_2704at 2858.111 kb on + strandat 2858.221 kb on + strandat 2858.337 kb on - strand, within HP15_2705at 2858.484 kb on + strand, within HP15_2705at 2858.562 kb on + strand, within HP15_2705at 2858.570 kb on - strand, within HP15_2705at 2858.737 kb on - strand, within HP15_2705at 2859.116 kb on + strandat 2859.206 kb on - strandat 2859.281 kb on + strand, within HP15_2706at 2859.300 kb on + strand, within HP15_2706at 2859.370 kb on - strand, within HP15_2706at 2859.378 kb on - strand, within HP15_2706at 2859.391 kb on + strand, within HP15_2706at 2859.399 kb on - strand, within HP15_2706at 2859.399 kb on - strand, within HP15_2706at 2859.440 kb on + strand, within HP15_2706at 2859.549 kb on - strand, within HP15_2706at 2859.559 kb on + strand, within HP15_2706at 2859.568 kb on - strand, within HP15_2706at 2859.580 kb on - strand, within HP15_2706at 2859.596 kb on + strand, within HP15_2706at 2859.623 kb on + strand, within HP15_2706at 2859.623 kb on + strand, within HP15_2706at 2859.631 kb on - strand, within HP15_2706at 2859.656 kb on + strand, within HP15_2706at 2859.668 kb on - strand, within HP15_2706at 2859.714 kb on - strand, within HP15_2706at 2859.743 kb on - strand, within HP15_2706at 2859.928 kb on + strandat 2859.936 kb on - strandat 2859.941 kb on + strandat 2860.034 kb on + strandat 2860.087 kb on - strandat 2860.087 kb on - strandat 2860.087 kb on - strandat 2860.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,857,131 - HP15_2703 0.84 +0.7
2,857,230 - -0.5
2,857,326 + -0.3
2,857,568 + HP15_2704 0.26 -0.6
2,857,664 + HP15_2704 0.38 -0.9
2,857,664 + HP15_2704 0.38 +0.3
2,857,672 - HP15_2704 0.40 -1.3
2,857,788 - HP15_2704 0.55 +0.0
2,857,795 - HP15_2704 0.56 -0.5
2,857,967 + HP15_2704 0.78 -0.1
2,857,967 + HP15_2704 0.78 +1.0
2,857,977 - HP15_2704 0.80 -0.1
2,857,986 + HP15_2704 0.81 -0.5
2,858,030 + HP15_2704 0.87 +0.1
2,858,111 + +0.3
2,858,221 + -0.3
2,858,337 - HP15_2705 0.21 +0.5
2,858,484 + HP15_2705 0.35 +1.2
2,858,562 + HP15_2705 0.43 +0.3
2,858,570 - HP15_2705 0.44 +0.6
2,858,737 - HP15_2705 0.61 -0.2
2,859,116 + +0.5
2,859,206 - +0.1
2,859,281 + HP15_2706 0.17 +0.5
2,859,300 + HP15_2706 0.19 -0.5
2,859,370 - HP15_2706 0.27 -0.2
2,859,378 - HP15_2706 0.28 +0.7
2,859,391 + HP15_2706 0.29 +0.0
2,859,399 - HP15_2706 0.30 +1.1
2,859,399 - HP15_2706 0.30 -0.1
2,859,440 + HP15_2706 0.35 +0.4
2,859,549 - HP15_2706 0.47 -0.1
2,859,559 + HP15_2706 0.49 +0.2
2,859,568 - HP15_2706 0.50 -0.2
2,859,580 - HP15_2706 0.51 -1.7
2,859,596 + HP15_2706 0.53 +0.4
2,859,623 + HP15_2706 0.56 -0.3
2,859,623 + HP15_2706 0.56 +1.2
2,859,631 - HP15_2706 0.57 -0.1
2,859,656 + HP15_2706 0.60 -0.3
2,859,668 - HP15_2706 0.61 -0.0
2,859,714 - HP15_2706 0.66 -1.1
2,859,743 - HP15_2706 0.70 -0.9
2,859,928 + -0.4
2,859,936 - +0.0
2,859,941 + +0.5
2,860,034 + +0.2
2,860,087 - +0.3
2,860,087 - +0.9
2,860,087 - +0.4
2,860,088 + +0.1

Or see this region's nucleotide sequence