Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2703 and HP15_2704 are separated by 17 nucleotides HP15_2704 and HP15_2705 overlap by 4 nucleotides HP15_2705 and HP15_2706 overlap by 1 nucleotides HP15_2706 and HP15_2707 are separated by 82 nucleotides
HP15_2703: HP15_2703 - branched-chain amino acid ABC transporter ATP-binding protein, at 2,855,990 to 2,857,354
_2703
HP15_2704: HP15_2704 - branched-chain amino acid ABC transporter, ATP-binding protein, at 2,857,372 to 2,858,130
_2704
HP15_2705: HP15_2705 - inner-membrane translocator, at 2,858,127 to 2,859,134
_2705
HP15_2706: HP15_2706 - inner-membrane translocator, at 2,859,134 to 2,860,009
_2706
HP15_2707: HP15_2707 - extracellular ligand-binding receptor, at 2,860,092 to 2,861,249
_2707
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-1
0
1 at 2857.131 kb on - strand, within HP15_2703 at 2857.230 kb on - strand at 2857.326 kb on + strand at 2857.568 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.664 kb on + strand, within HP15_2704 at 2857.672 kb on - strand, within HP15_2704 at 2857.788 kb on - strand, within HP15_2704 at 2857.795 kb on - strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.967 kb on + strand, within HP15_2704 at 2857.977 kb on - strand, within HP15_2704 at 2857.986 kb on + strand, within HP15_2704 at 2858.030 kb on + strand, within HP15_2704 at 2858.111 kb on + strand at 2858.221 kb on + strand at 2858.337 kb on - strand, within HP15_2705 at 2858.484 kb on + strand, within HP15_2705 at 2858.562 kb on + strand, within HP15_2705 at 2858.570 kb on - strand, within HP15_2705 at 2858.737 kb on - strand, within HP15_2705 at 2859.116 kb on + strand at 2859.206 kb on - strand at 2859.281 kb on + strand, within HP15_2706 at 2859.300 kb on + strand, within HP15_2706 at 2859.370 kb on - strand, within HP15_2706 at 2859.378 kb on - strand, within HP15_2706 at 2859.391 kb on + strand, within HP15_2706 at 2859.399 kb on - strand, within HP15_2706 at 2859.399 kb on - strand, within HP15_2706 at 2859.440 kb on + strand, within HP15_2706 at 2859.549 kb on - strand, within HP15_2706 at 2859.559 kb on + strand, within HP15_2706 at 2859.568 kb on - strand, within HP15_2706 at 2859.580 kb on - strand, within HP15_2706 at 2859.596 kb on + strand, within HP15_2706 at 2859.623 kb on + strand, within HP15_2706 at 2859.623 kb on + strand, within HP15_2706 at 2859.631 kb on - strand, within HP15_2706 at 2859.656 kb on + strand, within HP15_2706 at 2859.668 kb on - strand, within HP15_2706 at 2859.714 kb on - strand, within HP15_2706 at 2859.743 kb on - strand, within HP15_2706 at 2859.928 kb on + strand at 2859.936 kb on - strand at 2859.941 kb on + strand at 2860.034 kb on + strand at 2860.087 kb on - strand at 2860.087 kb on - strand at 2860.087 kb on - strand at 2860.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,857,131 - HP15_2703 0.84 +0.7 2,857,230 - -0.5 2,857,326 + -0.3 2,857,568 + HP15_2704 0.26 -0.6 2,857,664 + HP15_2704 0.38 -0.9 2,857,664 + HP15_2704 0.38 +0.3 2,857,672 - HP15_2704 0.40 -1.3 2,857,788 - HP15_2704 0.55 +0.0 2,857,795 - HP15_2704 0.56 -0.5 2,857,967 + HP15_2704 0.78 -0.1 2,857,967 + HP15_2704 0.78 +1.0 2,857,977 - HP15_2704 0.80 -0.1 2,857,986 + HP15_2704 0.81 -0.5 2,858,030 + HP15_2704 0.87 +0.1 2,858,111 + +0.3 2,858,221 + -0.3 2,858,337 - HP15_2705 0.21 +0.5 2,858,484 + HP15_2705 0.35 +1.2 2,858,562 + HP15_2705 0.43 +0.3 2,858,570 - HP15_2705 0.44 +0.6 2,858,737 - HP15_2705 0.61 -0.2 2,859,116 + +0.5 2,859,206 - +0.1 2,859,281 + HP15_2706 0.17 +0.5 2,859,300 + HP15_2706 0.19 -0.5 2,859,370 - HP15_2706 0.27 -0.2 2,859,378 - HP15_2706 0.28 +0.7 2,859,391 + HP15_2706 0.29 +0.0 2,859,399 - HP15_2706 0.30 +1.1 2,859,399 - HP15_2706 0.30 -0.1 2,859,440 + HP15_2706 0.35 +0.4 2,859,549 - HP15_2706 0.47 -0.1 2,859,559 + HP15_2706 0.49 +0.2 2,859,568 - HP15_2706 0.50 -0.2 2,859,580 - HP15_2706 0.51 -1.7 2,859,596 + HP15_2706 0.53 +0.4 2,859,623 + HP15_2706 0.56 -0.3 2,859,623 + HP15_2706 0.56 +1.2 2,859,631 - HP15_2706 0.57 -0.1 2,859,656 + HP15_2706 0.60 -0.3 2,859,668 - HP15_2706 0.61 -0.0 2,859,714 - HP15_2706 0.66 -1.1 2,859,743 - HP15_2706 0.70 -0.9 2,859,928 + -0.4 2,859,936 - +0.0 2,859,941 + +0.5 2,860,034 + +0.2 2,860,087 - +0.3 2,860,087 - +0.9 2,860,087 - +0.4 2,860,088 + +0.1
Or see this region's nucleotide sequence