Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2328 and HP15_2329 are separated by 12 nucleotides HP15_2329 and HP15_2330 are separated by 230 nucleotides
HP15_2328: HP15_2328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,447,220 to 2,448,686
_2328
HP15_2329: HP15_2329 - two-component sensor, at 2,448,699 to 2,449,937
_2329
HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601
_2330
Position (kb)
2448
2449
2450 Strain fitness (log2 ratio)
-1
0
1 at 2447.897 kb on + strand, within HP15_2328 at 2447.976 kb on + strand, within HP15_2328 at 2448.027 kb on - strand, within HP15_2328 at 2448.027 kb on - strand, within HP15_2328 at 2448.037 kb on - strand, within HP15_2328 at 2448.183 kb on + strand, within HP15_2328 at 2448.487 kb on + strand, within HP15_2328 at 2448.622 kb on + strand at 2448.644 kb on + strand at 2448.644 kb on + strand at 2448.644 kb on + strand at 2448.644 kb on + strand at 2448.652 kb on - strand at 2448.652 kb on - strand at 2448.684 kb on - strand at 2448.742 kb on + strand at 2448.816 kb on + strand at 2448.881 kb on + strand, within HP15_2329 at 2448.989 kb on + strand, within HP15_2329 at 2449.110 kb on - strand, within HP15_2329 at 2449.196 kb on + strand, within HP15_2329 at 2449.282 kb on + strand, within HP15_2329 at 2449.312 kb on - strand, within HP15_2329 at 2449.314 kb on + strand, within HP15_2329 at 2449.368 kb on - strand, within HP15_2329 at 2449.371 kb on + strand, within HP15_2329 at 2449.425 kb on - strand, within HP15_2329 at 2449.466 kb on + strand, within HP15_2329 at 2449.484 kb on + strand, within HP15_2329 at 2449.492 kb on - strand, within HP15_2329 at 2449.529 kb on + strand, within HP15_2329 at 2449.543 kb on - strand, within HP15_2329 at 2449.548 kb on - strand, within HP15_2329 at 2449.560 kb on - strand, within HP15_2329 at 2449.809 kb on - strand, within HP15_2329 at 2449.882 kb on + strand at 2449.882 kb on + strand at 2449.962 kb on - strand at 2449.972 kb on - strand at 2450.166 kb on + strand at 2450.166 kb on + strand at 2450.176 kb on + strand at 2450.329 kb on + strand, within HP15_2330 at 2450.359 kb on + strand, within HP15_2330 at 2450.439 kb on - strand, within HP15_2330 at 2450.439 kb on - strand, within HP15_2330 at 2450.470 kb on + strand, within HP15_2330 at 2450.598 kb on + strand, within HP15_2330 at 2450.657 kb on - strand, within HP15_2330 at 2450.850 kb on + strand, within HP15_2330 at 2450.891 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330 at 2450.926 kb on + strand, within HP15_2330
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,447,897 + HP15_2328 0.46 -0.1 2,447,976 + HP15_2328 0.52 +0.4 2,448,027 - HP15_2328 0.55 +0.5 2,448,027 - HP15_2328 0.55 +0.6 2,448,037 - HP15_2328 0.56 +1.4 2,448,183 + HP15_2328 0.66 +1.2 2,448,487 + HP15_2328 0.86 +0.8 2,448,622 + +0.8 2,448,644 + -0.1 2,448,644 + -0.4 2,448,644 + +0.3 2,448,644 + +0.9 2,448,652 - -0.1 2,448,652 - +0.6 2,448,684 - +0.7 2,448,742 + +0.5 2,448,816 + +0.2 2,448,881 + HP15_2329 0.15 +0.6 2,448,989 + HP15_2329 0.23 +0.8 2,449,110 - HP15_2329 0.33 +0.9 2,449,196 + HP15_2329 0.40 +0.2 2,449,282 + HP15_2329 0.47 +0.9 2,449,312 - HP15_2329 0.49 +0.1 2,449,314 + HP15_2329 0.50 +0.7 2,449,368 - HP15_2329 0.54 +0.2 2,449,371 + HP15_2329 0.54 -0.0 2,449,425 - HP15_2329 0.59 -0.4 2,449,466 + HP15_2329 0.62 +0.5 2,449,484 + HP15_2329 0.63 +0.7 2,449,492 - HP15_2329 0.64 +0.3 2,449,529 + HP15_2329 0.67 +0.2 2,449,543 - HP15_2329 0.68 +0.4 2,449,548 - HP15_2329 0.69 +0.4 2,449,560 - HP15_2329 0.69 +0.6 2,449,809 - HP15_2329 0.90 +0.1 2,449,882 + +0.2 2,449,882 + -1.4 2,449,962 - -1.0 2,449,972 - -0.1 2,450,166 + -0.7 2,450,166 + -0.2 2,450,176 + +0.2 2,450,329 + HP15_2330 0.11 +0.2 2,450,359 + HP15_2330 0.13 +0.3 2,450,439 - HP15_2330 0.19 +0.4 2,450,439 - HP15_2330 0.19 +0.8 2,450,470 + HP15_2330 0.21 +0.3 2,450,598 + HP15_2330 0.30 +0.4 2,450,657 - HP15_2330 0.34 +0.3 2,450,850 + HP15_2330 0.48 +0.4 2,450,891 + HP15_2330 0.50 +0.1 2,450,926 + HP15_2330 0.53 +0.6 2,450,926 + HP15_2330 0.53 +0.3 2,450,926 + HP15_2330 0.53 +0.2
Or see this region's nucleotide sequence