Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2224 and HP15_2225 are separated by 155 nucleotides HP15_2225 and HP15_2226 are separated by 151 nucleotides HP15_2226 and HP15_2227 are separated by 4 nucleotides
HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326
_2224
HP15_2225: HP15_2225 - YciI-like protein, at 2,343,482 to 2,343,781
_2225
HP15_2226: HP15_2226 - SH3, type 3 domain protein, at 2,343,933 to 2,344,577
_2226
HP15_2227: HP15_2227 - protein containing type IV pilus assembly PilZ domain, at 2,344,582 to 2,344,872
_2227
Position (kb)
2343
2344 Strain fitness (log2 ratio)
-1
0
1 at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.563 kb on + strand, within HP15_2224 at 2342.676 kb on - strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.908 kb on + strand, within HP15_2224 at 2342.916 kb on - strand, within HP15_2224 at 2343.389 kb on + strand at 2343.409 kb on - strand at 2343.463 kb on + strand at 2343.627 kb on - strand, within HP15_2225 at 2343.639 kb on + strand, within HP15_2225 at 2344.616 kb on + strand, within HP15_2227 at 2344.646 kb on + strand, within HP15_2227 at 2344.679 kb on + strand, within HP15_2227 at 2344.712 kb on + strand, within HP15_2227 at 2344.769 kb on - strand, within HP15_2227
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,342,530 - +0.5 2,342,530 - -0.6 2,342,530 - +0.1 2,342,563 + HP15_2224 0.11 +0.3 2,342,676 - HP15_2224 0.24 -1.2 2,342,896 + HP15_2224 0.50 -0.2 2,342,896 + HP15_2224 0.50 -0.1 2,342,908 + HP15_2224 0.51 +1.3 2,342,916 - HP15_2224 0.52 +0.5 2,343,389 + +0.5 2,343,409 - +1.2 2,343,463 + -0.4 2,343,627 - HP15_2225 0.48 +0.3 2,343,639 + HP15_2225 0.52 +0.7 2,344,616 + HP15_2227 0.12 +0.5 2,344,646 + HP15_2227 0.22 +0.1 2,344,679 + HP15_2227 0.33 +0.6 2,344,712 + HP15_2227 0.45 +0.0 2,344,769 - HP15_2227 0.64 +0.1
Or see this region's nucleotide sequence