Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2200 and HP15_2201 are separated by 145 nucleotides HP15_2201 and HP15_2202 overlap by 9 nucleotides HP15_2202 and HP15_2203 are separated by 256 nucleotides
HP15_2200: HP15_2200 - oxidoreductase FAD/NAD(P)-binding domain protein, at 2,317,700 to 2,318,470
_2200
HP15_2201: HP15_2201 - transcriptional regulator, LysR family, at 2,318,616 to 2,319,499
_2201
HP15_2202: HP15_2202 - tRNA-(ms(2)io(6)a)-hydroxylase, at 2,319,491 to 2,320,099
_2202
HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950
_2203
Position (kb)
2318
2319
2320 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2317.627 kb on - strand at 2317.664 kb on - strand at 2317.793 kb on - strand, within HP15_2200 at 2318.260 kb on - strand, within HP15_2200 at 2318.328 kb on + strand, within HP15_2200 at 2318.400 kb on + strand at 2318.414 kb on - strand at 2318.543 kb on - strand at 2318.543 kb on - strand at 2318.545 kb on + strand at 2318.796 kb on - strand, within HP15_2201 at 2318.851 kb on + strand, within HP15_2201 at 2318.864 kb on - strand, within HP15_2201 at 2318.898 kb on + strand, within HP15_2201 at 2318.902 kb on + strand, within HP15_2201 at 2318.962 kb on + strand, within HP15_2201 at 2318.967 kb on + strand, within HP15_2201 at 2318.970 kb on - strand, within HP15_2201 at 2318.971 kb on + strand, within HP15_2201 at 2319.001 kb on - strand, within HP15_2201 at 2319.070 kb on + strand, within HP15_2201 at 2319.070 kb on + strand, within HP15_2201 at 2319.078 kb on - strand, within HP15_2201 at 2319.119 kb on - strand, within HP15_2201 at 2319.170 kb on - strand, within HP15_2201 at 2319.241 kb on - strand, within HP15_2201 at 2319.277 kb on + strand, within HP15_2201 at 2319.305 kb on + strand, within HP15_2201 at 2319.479 kb on - strand at 2319.616 kb on + strand, within HP15_2202 at 2319.672 kb on + strand, within HP15_2202 at 2319.688 kb on - strand, within HP15_2202 at 2319.715 kb on + strand, within HP15_2202 at 2319.752 kb on - strand, within HP15_2202 at 2319.882 kb on - strand, within HP15_2202 at 2319.904 kb on + strand, within HP15_2202 at 2319.912 kb on + strand, within HP15_2202 at 2319.925 kb on + strand, within HP15_2202 at 2319.995 kb on - strand, within HP15_2202 at 2320.028 kb on + strand, within HP15_2202 at 2320.038 kb on + strand, within HP15_2202 at 2320.045 kb on + strand at 2320.061 kb on - strand at 2320.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,317,627 - +1.6 2,317,664 - +0.1 2,317,793 - HP15_2200 0.12 -2.9 2,318,260 - HP15_2200 0.73 -4.8 2,318,328 + HP15_2200 0.81 -3.0 2,318,400 + -2.1 2,318,414 - -2.0 2,318,543 - -1.8 2,318,543 - -3.3 2,318,545 + -2.6 2,318,796 - HP15_2201 0.20 -0.1 2,318,851 + HP15_2201 0.27 -0.6 2,318,864 - HP15_2201 0.28 +0.5 2,318,898 + HP15_2201 0.32 -1.0 2,318,902 + HP15_2201 0.32 -2.0 2,318,962 + HP15_2201 0.39 -0.3 2,318,967 + HP15_2201 0.40 -0.5 2,318,970 - HP15_2201 0.40 -0.9 2,318,971 + HP15_2201 0.40 -0.4 2,319,001 - HP15_2201 0.44 +0.6 2,319,070 + HP15_2201 0.51 -0.1 2,319,070 + HP15_2201 0.51 -0.8 2,319,078 - HP15_2201 0.52 -2.3 2,319,119 - HP15_2201 0.57 -1.7 2,319,170 - HP15_2201 0.63 -0.8 2,319,241 - HP15_2201 0.71 -1.2 2,319,277 + HP15_2201 0.75 -1.1 2,319,305 + HP15_2201 0.78 -0.3 2,319,479 - -0.2 2,319,616 + HP15_2202 0.21 -1.0 2,319,672 + HP15_2202 0.30 -0.3 2,319,688 - HP15_2202 0.32 -0.1 2,319,715 + HP15_2202 0.37 +0.1 2,319,752 - HP15_2202 0.43 -0.7 2,319,882 - HP15_2202 0.64 +0.0 2,319,904 + HP15_2202 0.68 -0.2 2,319,912 + HP15_2202 0.69 -0.2 2,319,925 + HP15_2202 0.71 -0.4 2,319,995 - HP15_2202 0.83 -0.1 2,320,028 + HP15_2202 0.88 -0.1 2,320,038 + HP15_2202 0.90 -0.6 2,320,045 + -0.6 2,320,061 - -0.3 2,320,154 + +0.3
Or see this region's nucleotide sequence