Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1939 and HP15_1940 overlap by 14 nucleotides HP15_1940 and HP15_1941 are separated by 30 nucleotides
HP15_1939: HP15_1939 - glycosyl transferase, group 1, at 2,058,085 to 2,060,025
_1939
HP15_1940: HP15_1940 - conserved hypothetical protein, at 2,060,012 to 2,060,410
_1940
HP15_1941: HP15_1941 - alcohol dehydrogenase zinc-binding domain protein, at 2,060,441 to 2,061,448
_1941
Position (kb)
2060
2061 Strain fitness (log2 ratio)
-2
-1
0
1 at 2059.040 kb on - strand, within HP15_1939 at 2059.040 kb on - strand, within HP15_1939 at 2059.061 kb on - strand, within HP15_1939 at 2059.214 kb on + strand, within HP15_1939 at 2059.292 kb on + strand, within HP15_1939 at 2059.524 kb on - strand, within HP15_1939 at 2059.545 kb on - strand, within HP15_1939 at 2059.684 kb on - strand, within HP15_1939 at 2059.918 kb on + strand at 2059.958 kb on + strand at 2060.089 kb on - strand, within HP15_1940 at 2060.099 kb on - strand, within HP15_1940 at 2060.274 kb on + strand, within HP15_1940 at 2060.459 kb on + strand at 2060.563 kb on - strand, within HP15_1941 at 2060.566 kb on + strand, within HP15_1941 at 2060.628 kb on - strand, within HP15_1941 at 2060.678 kb on + strand, within HP15_1941 at 2060.704 kb on - strand, within HP15_1941 at 2060.769 kb on + strand, within HP15_1941 at 2060.829 kb on - strand, within HP15_1941 at 2060.913 kb on - strand, within HP15_1941 at 2060.988 kb on + strand, within HP15_1941 at 2061.012 kb on + strand, within HP15_1941 at 2061.117 kb on - strand, within HP15_1941 at 2061.182 kb on + strand, within HP15_1941 at 2061.294 kb on + strand, within HP15_1941 at 2061.302 kb on - strand, within HP15_1941 at 2061.313 kb on - strand, within HP15_1941 at 2061.353 kb on - strand at 2061.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,059,040 - HP15_1939 0.49 -1.1 2,059,040 - HP15_1939 0.49 +0.5 2,059,061 - HP15_1939 0.50 +0.4 2,059,214 + HP15_1939 0.58 -0.8 2,059,292 + HP15_1939 0.62 -0.3 2,059,524 - HP15_1939 0.74 +0.0 2,059,545 - HP15_1939 0.75 +0.5 2,059,684 - HP15_1939 0.82 -0.5 2,059,918 + +0.3 2,059,958 + -1.0 2,060,089 - HP15_1940 0.19 +0.8 2,060,099 - HP15_1940 0.22 +0.9 2,060,274 + HP15_1940 0.66 +0.1 2,060,459 + +1.0 2,060,563 - HP15_1941 0.12 +0.7 2,060,566 + HP15_1941 0.12 +0.8 2,060,628 - HP15_1941 0.19 -1.4 2,060,678 + HP15_1941 0.24 +0.0 2,060,704 - HP15_1941 0.26 -0.8 2,060,769 + HP15_1941 0.33 -1.4 2,060,829 - HP15_1941 0.38 +0.5 2,060,913 - HP15_1941 0.47 +0.0 2,060,988 + HP15_1941 0.54 -2.0 2,061,012 + HP15_1941 0.57 -1.3 2,061,117 - HP15_1941 0.67 +0.8 2,061,182 + HP15_1941 0.74 +1.4 2,061,294 + HP15_1941 0.85 +1.4 2,061,302 - HP15_1941 0.85 +1.0 2,061,313 - HP15_1941 0.87 +0.4 2,061,353 - -0.5 2,061,360 - +0.5
Or see this region's nucleotide sequence