Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1894 and HP15_1895 are separated by 156 nucleotides HP15_1895 and HP15_1896 are separated by 96 nucleotides
HP15_1894: HP15_1894 - eight transmembrane protein EpsH-like protein, at 2,001,875 to 2,003,290
_1894
HP15_1895: HP15_1895 - secreted protein containing PEP-CTERM bacterial domain, at 2,003,447 to 2,003,950
_1895
HP15_1896: HP15_1896 - polysaccharide biosynthesis protein, at 2,004,047 to 2,005,492
_1896
Position (kb)
2003
2004 Strain fitness (log2 ratio)
-1
0
1 at 2002.473 kb on - strand, within HP15_1894 at 2002.857 kb on + strand, within HP15_1894 at 2002.892 kb on - strand, within HP15_1894 at 2002.892 kb on - strand, within HP15_1894 at 2002.947 kb on - strand, within HP15_1894 at 2003.037 kb on - strand, within HP15_1894 at 2003.062 kb on + strand, within HP15_1894 at 2003.084 kb on + strand, within HP15_1894 at 2003.084 kb on + strand, within HP15_1894 at 2003.092 kb on - strand, within HP15_1894 at 2003.092 kb on - strand, within HP15_1894 at 2003.092 kb on - strand, within HP15_1894 at 2003.228 kb on + strand at 2003.236 kb on - strand at 2003.236 kb on - strand at 2003.262 kb on - strand at 2003.280 kb on - strand at 2003.394 kb on + strand at 2003.600 kb on + strand, within HP15_1895 at 2003.600 kb on + strand, within HP15_1895 at 2003.608 kb on - strand, within HP15_1895 at 2004.139 kb on - strand at 2004.274 kb on + strand, within HP15_1896 at 2004.282 kb on - strand, within HP15_1896 at 2004.381 kb on + strand, within HP15_1896 at 2004.386 kb on + strand, within HP15_1896 at 2004.402 kb on + strand, within HP15_1896 at 2004.440 kb on - strand, within HP15_1896 at 2004.606 kb on + strand, within HP15_1896 at 2004.617 kb on + strand, within HP15_1896 at 2004.702 kb on + strand, within HP15_1896 at 2004.931 kb on + strand, within HP15_1896
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 2,002,473 - HP15_1894 0.42 -0.6 2,002,857 + HP15_1894 0.69 +1.1 2,002,892 - HP15_1894 0.72 -1.0 2,002,892 - HP15_1894 0.72 +0.2 2,002,947 - HP15_1894 0.76 -0.8 2,003,037 - HP15_1894 0.82 -0.1 2,003,062 + HP15_1894 0.84 +0.5 2,003,084 + HP15_1894 0.85 -0.1 2,003,084 + HP15_1894 0.85 +0.8 2,003,092 - HP15_1894 0.86 -0.2 2,003,092 - HP15_1894 0.86 +0.4 2,003,092 - HP15_1894 0.86 -1.0 2,003,228 + +0.3 2,003,236 - +0.2 2,003,236 - +0.5 2,003,262 - +0.5 2,003,280 - +0.6 2,003,394 + -0.4 2,003,600 + HP15_1895 0.30 -0.7 2,003,600 + HP15_1895 0.30 +1.2 2,003,608 - HP15_1895 0.32 +1.4 2,004,139 - -0.5 2,004,274 + HP15_1896 0.16 -0.0 2,004,282 - HP15_1896 0.16 -0.3 2,004,381 + HP15_1896 0.23 -0.1 2,004,386 + HP15_1896 0.23 +0.0 2,004,402 + HP15_1896 0.25 +0.4 2,004,440 - HP15_1896 0.27 +0.0 2,004,606 + HP15_1896 0.39 -0.2 2,004,617 + HP15_1896 0.39 -0.9 2,004,702 + HP15_1896 0.45 +0.3 2,004,931 + HP15_1896 0.61 -0.8
Or see this region's nucleotide sequence