Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1878 and HP15_1879 are separated by 24 nucleotides HP15_1879 and HP15_1880 overlap by 1 nucleotides HP15_1880 and HP15_1881 overlap by 4 nucleotides HP15_1881 and HP15_1882 overlap by 4 nucleotides
HP15_1878: HP15_1878 - von Willebrand factor, type A, at 1,983,429 to 1,985,174
_1878
HP15_1879: HP15_1879 - conserved hypothetical protein, membrane, at 1,985,199 to 1,985,543
_1879
HP15_1880: HP15_1880 - uncharacterized conserved protein UCP006173, at 1,985,543 to 1,985,989
_1880
HP15_1881: HP15_1881 - YcgL domain protein, at 1,985,986 to 1,986,279
_1881
HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433
_1882
Position (kb)
1985
1986 Strain fitness (log2 ratio)
-1
0
1 at 1984.201 kb on - strand, within HP15_1878 at 1984.225 kb on + strand, within HP15_1878 at 1984.396 kb on - strand, within HP15_1878 at 1984.606 kb on + strand, within HP15_1878 at 1984.614 kb on - strand, within HP15_1878 at 1984.632 kb on - strand, within HP15_1878 at 1984.749 kb on - strand, within HP15_1878 at 1984.766 kb on - strand, within HP15_1878 at 1984.797 kb on + strand, within HP15_1878 at 1984.986 kb on + strand, within HP15_1878 at 1984.988 kb on + strand, within HP15_1878 at 1985.104 kb on + strand at 1985.135 kb on + strand at 1985.236 kb on + strand, within HP15_1879 at 1985.717 kb on + strand, within HP15_1880 at 1985.725 kb on - strand, within HP15_1880 at 1985.762 kb on - strand, within HP15_1880 at 1985.779 kb on - strand, within HP15_1880 at 1985.789 kb on - strand, within HP15_1880 at 1985.853 kb on + strand, within HP15_1880 at 1986.000 kb on + strand at 1986.125 kb on + strand, within HP15_1881 at 1986.230 kb on - strand, within HP15_1881 at 1986.492 kb on - strand, within HP15_1882
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,984,201 - HP15_1878 0.44 -0.1 1,984,225 + HP15_1878 0.46 +0.2 1,984,396 - HP15_1878 0.55 +1.0 1,984,606 + HP15_1878 0.67 -1.4 1,984,614 - HP15_1878 0.68 +0.6 1,984,632 - HP15_1878 0.69 -0.5 1,984,749 - HP15_1878 0.76 -1.1 1,984,766 - HP15_1878 0.77 -0.2 1,984,797 + HP15_1878 0.78 -0.1 1,984,986 + HP15_1878 0.89 -0.4 1,984,988 + HP15_1878 0.89 +0.4 1,985,104 + -0.7 1,985,135 + +0.2 1,985,236 + HP15_1879 0.11 +0.6 1,985,717 + HP15_1880 0.39 -0.0 1,985,725 - HP15_1880 0.41 +0.5 1,985,762 - HP15_1880 0.49 +0.6 1,985,779 - HP15_1880 0.53 -0.1 1,985,789 - HP15_1880 0.55 +0.5 1,985,853 + HP15_1880 0.69 +0.8 1,986,000 + -0.6 1,986,125 + HP15_1881 0.47 +0.9 1,986,230 - HP15_1881 0.83 +1.3 1,986,492 - HP15_1882 0.19 +0.4
Or see this region's nucleotide sequence