Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1779 and HP15_1780 are separated by 4 nucleotides HP15_1780 and HP15_1781 are separated by 97 nucleotides HP15_1781 and HP15_1782 are separated by 37 nucleotides
HP15_1779: HP15_1779 - protein of unknown function, YeeE/YedE, at 1,875,120 to 1,875,557
_1779
HP15_1780: HP15_1780 - protein of unknown function, YeeE/YedE, at 1,875,562 to 1,875,987
_1780
HP15_1781: HP15_1781 - beta-lactamase hydrolase-like protein, at 1,876,085 to 1,876,516
_1781
HP15_1782: HP15_1782 - ferrochelatase, at 1,876,554 to 1,877,663
_1782
Position (kb)
1876
1877 Strain fitness (log2 ratio)
-1
0
1 at 1875.159 kb on + strand at 1875.352 kb on - strand, within HP15_1779 at 1875.391 kb on - strand, within HP15_1779 at 1875.441 kb on + strand, within HP15_1779 at 1875.500 kb on - strand, within HP15_1779 at 1875.611 kb on + strand, within HP15_1780 at 1875.731 kb on + strand, within HP15_1780 at 1875.852 kb on - strand, within HP15_1780 at 1875.872 kb on + strand, within HP15_1780 at 1875.872 kb on + strand, within HP15_1780 at 1876.026 kb on + strand at 1876.196 kb on + strand, within HP15_1781 at 1876.398 kb on - strand, within HP15_1781 at 1876.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,875,159 + +0.4 1,875,352 - HP15_1779 0.53 +0.4 1,875,391 - HP15_1779 0.62 -0.2 1,875,441 + HP15_1779 0.73 +0.4 1,875,500 - HP15_1779 0.87 -0.1 1,875,611 + HP15_1780 0.12 -0.0 1,875,731 + HP15_1780 0.40 +0.0 1,875,852 - HP15_1780 0.68 -0.1 1,875,872 + HP15_1780 0.73 +0.1 1,875,872 + HP15_1780 0.73 -1.5 1,876,026 + +0.5 1,876,196 + HP15_1781 0.26 -1.4 1,876,398 - HP15_1781 0.72 -1.7 1,876,559 + -0.6
Or see this region's nucleotide sequence