Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1698 and HP15_1699 are separated by 616 nucleotides HP15_1699 and HP15_1700 are separated by 97 nucleotides
HP15_1698: HP15_1698 - NADH-dependent flavin oxidoreductase, at 1,787,420 to 1,788,622
_1698
HP15_1699: HP15_1699 - resolvase, at 1,789,239 to 1,789,835
_1699
HP15_1700: HP15_1700 - conserved hypothetical protein, at 1,789,933 to 1,794,552
_1700
Position (kb)
1789
1790 Strain fitness (log2 ratio)
-1
0
1
2 at 1788.259 kb on + strand, within HP15_1698 at 1788.260 kb on + strand, within HP15_1698 at 1788.342 kb on + strand, within HP15_1698 at 1788.368 kb on + strand, within HP15_1698 at 1788.582 kb on - strand at 1788.646 kb on + strand at 1788.709 kb on + strand at 1788.856 kb on - strand at 1788.856 kb on - strand at 1788.858 kb on + strand at 1788.866 kb on - strand at 1788.952 kb on - strand at 1789.083 kb on - strand at 1789.088 kb on - strand at 1789.179 kb on + strand at 1789.196 kb on + strand at 1789.196 kb on + strand at 1789.209 kb on + strand at 1789.251 kb on + strand at 1789.290 kb on - strand at 1789.301 kb on + strand, within HP15_1699 at 1789.461 kb on - strand, within HP15_1699 at 1789.637 kb on + strand, within HP15_1699 at 1789.637 kb on + strand, within HP15_1699 at 1789.637 kb on + strand, within HP15_1699 at 1789.645 kb on - strand, within HP15_1699 at 1789.645 kb on - strand, within HP15_1699 at 1789.683 kb on - strand, within HP15_1699 at 1789.695 kb on - strand, within HP15_1699 at 1789.836 kb on + strand at 1790.278 kb on + strand at 1790.702 kb on + strand, within HP15_1700 at 1790.710 kb on - strand, within HP15_1700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,788,259 + HP15_1698 0.70 -0.1 1,788,260 + HP15_1698 0.70 -0.3 1,788,342 + HP15_1698 0.77 +0.6 1,788,368 + HP15_1698 0.79 -0.1 1,788,582 - -0.2 1,788,646 + -0.8 1,788,709 + -0.3 1,788,856 - +0.5 1,788,856 - +0.5 1,788,858 + -1.4 1,788,866 - -0.7 1,788,952 - +0.0 1,789,083 - -0.3 1,789,088 - -0.7 1,789,179 + -0.7 1,789,196 + -0.4 1,789,196 + -0.6 1,789,209 + +0.6 1,789,251 + +0.1 1,789,290 - +1.2 1,789,301 + HP15_1699 0.10 -0.4 1,789,461 - HP15_1699 0.37 +0.9 1,789,637 + HP15_1699 0.67 -0.3 1,789,637 + HP15_1699 0.67 +1.3 1,789,637 + HP15_1699 0.67 -0.3 1,789,645 - HP15_1699 0.68 -0.0 1,789,645 - HP15_1699 0.68 +2.6 1,789,683 - HP15_1699 0.74 +0.2 1,789,695 - HP15_1699 0.76 +0.8 1,789,836 + +0.6 1,790,278 + -0.8 1,790,702 + HP15_1700 0.17 +1.1 1,790,710 - HP15_1700 0.17 -0.2
Or see this region's nucleotide sequence