Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1694 and HP15_1695 are separated by 110 nucleotides HP15_1695 and HP15_1696 are separated by 183 nucleotides HP15_1696 and HP15_1697 are separated by 2 nucleotides
HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311
_1694
HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688
_1695
HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288
_1696
HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217
_1697
Position (kb)
1785
1786 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1784.520 kb on + strand, within HP15_1694 at 1784.527 kb on - strand, within HP15_1694 at 1784.567 kb on + strand, within HP15_1694 at 1784.643 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.714 kb on - strand, within HP15_1694 at 1784.791 kb on + strand, within HP15_1694 at 1784.797 kb on - strand, within HP15_1694 at 1785.108 kb on + strand, within HP15_1694 at 1785.119 kb on + strand, within HP15_1694 at 1785.202 kb on + strand at 1785.507 kb on + strand, within HP15_1695 at 1785.516 kb on - strand, within HP15_1695 at 1785.688 kb on + strand at 1786.023 kb on - strand, within HP15_1696 at 1786.057 kb on + strand, within HP15_1696 at 1786.065 kb on - strand, within HP15_1696 at 1786.198 kb on - strand, within HP15_1696 at 1786.274 kb on - strand at 1786.289 kb on + strand at 1786.295 kb on - strand at 1786.295 kb on - strand at 1786.385 kb on - strand, within HP15_1697 at 1786.417 kb on - strand, within HP15_1697 at 1786.449 kb on - strand, within HP15_1697 at 1786.511 kb on + strand, within HP15_1697 at 1786.545 kb on - strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.622 kb on - strand, within HP15_1697 at 1786.682 kb on - strand, within HP15_1697
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,784,520 + HP15_1694 0.40 -0.9 1,784,527 - HP15_1694 0.41 +0.4 1,784,567 + HP15_1694 0.44 +0.4 1,784,643 + HP15_1694 0.50 -0.5 1,784,653 + HP15_1694 0.50 +0.3 1,784,653 + HP15_1694 0.50 +0.4 1,784,661 - HP15_1694 0.51 -0.6 1,784,661 - HP15_1694 0.51 +0.1 1,784,714 - HP15_1694 0.55 +1.9 1,784,791 + HP15_1694 0.61 -1.8 1,784,797 - HP15_1694 0.61 +0.1 1,785,108 + HP15_1694 0.85 -0.4 1,785,119 + HP15_1694 0.85 +0.5 1,785,202 + +0.4 1,785,507 + HP15_1695 0.32 +0.7 1,785,516 - HP15_1695 0.35 +0.9 1,785,688 + -0.5 1,786,023 - HP15_1696 0.36 +3.0 1,786,057 + HP15_1696 0.44 -0.4 1,786,065 - HP15_1696 0.46 +0.1 1,786,198 - HP15_1696 0.78 -0.4 1,786,274 - -0.2 1,786,289 + +0.9 1,786,295 - +0.2 1,786,295 - +0.2 1,786,385 - HP15_1697 0.10 +0.6 1,786,417 - HP15_1697 0.14 +0.5 1,786,449 - HP15_1697 0.17 -0.0 1,786,511 + HP15_1697 0.24 -0.7 1,786,545 - HP15_1697 0.27 -1.7 1,786,614 + HP15_1697 0.35 +0.1 1,786,614 + HP15_1697 0.35 -0.5 1,786,614 + HP15_1697 0.35 -0.6 1,786,622 - HP15_1697 0.36 +0.2 1,786,682 - HP15_1697 0.42 -0.1
Or see this region's nucleotide sequence