Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1652 and HP15_1653 are separated by 242 nucleotides HP15_1653 and HP15_1654 are separated by 46 nucleotides HP15_1654 and HP15_1655 are separated by 225 nucleotides
HP15_1652: HP15_1652 - disulfide isomerase/thiol-disulfide oxidase-like protein, at 1,748,603 to 1,749,370
_1652
HP15_1653: HP15_1653 - protein containing DUF1348, at 1,749,613 to 1,750,083
_1653
HP15_1654: HP15_1654 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 1,750,130 to 1,750,690
_1654
HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485
_1655
Position (kb)
1749
1750
1751 Strain fitness (log2 ratio)
-1
0
1 at 1748.633 kb on + strand at 1748.741 kb on + strand, within HP15_1652 at 1748.748 kb on + strand, within HP15_1652 at 1748.749 kb on - strand, within HP15_1652 at 1748.769 kb on + strand, within HP15_1652 at 1748.906 kb on + strand, within HP15_1652 at 1748.947 kb on + strand, within HP15_1652 at 1749.088 kb on + strand, within HP15_1652 at 1749.177 kb on - strand, within HP15_1652 at 1749.247 kb on + strand, within HP15_1652 at 1749.404 kb on + strand at 1749.651 kb on + strand at 1749.839 kb on + strand, within HP15_1653 at 1749.973 kb on - strand, within HP15_1653 at 1749.990 kb on + strand, within HP15_1653 at 1750.087 kb on - strand at 1750.087 kb on - strand at 1750.123 kb on + strand at 1750.131 kb on - strand at 1750.133 kb on + strand at 1750.171 kb on - strand at 1750.204 kb on + strand, within HP15_1654 at 1750.204 kb on - strand, within HP15_1654 at 1750.221 kb on - strand, within HP15_1654 at 1750.356 kb on - strand, within HP15_1654 at 1750.383 kb on - strand, within HP15_1654 at 1750.598 kb on - strand, within HP15_1654 at 1750.635 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.810 kb on - strand at 1750.891 kb on - strand at 1751.058 kb on + strand, within HP15_1655
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,748,633 + +0.5 1,748,741 + HP15_1652 0.18 -0.2 1,748,748 + HP15_1652 0.19 +0.4 1,748,749 - HP15_1652 0.19 -0.1 1,748,769 + HP15_1652 0.22 -0.3 1,748,906 + HP15_1652 0.39 -1.1 1,748,947 + HP15_1652 0.45 -0.6 1,749,088 + HP15_1652 0.63 -1.4 1,749,177 - HP15_1652 0.75 +0.1 1,749,247 + HP15_1652 0.84 +0.2 1,749,404 + +0.3 1,749,651 + +0.1 1,749,839 + HP15_1653 0.48 +0.0 1,749,973 - HP15_1653 0.76 +0.6 1,749,990 + HP15_1653 0.80 +0.4 1,750,087 - -0.9 1,750,087 - -0.1 1,750,123 + -0.0 1,750,131 - +0.6 1,750,133 + +0.1 1,750,171 - -0.1 1,750,204 + HP15_1654 0.13 -0.3 1,750,204 - HP15_1654 0.13 +0.5 1,750,221 - HP15_1654 0.16 -0.1 1,750,356 - HP15_1654 0.40 +0.4 1,750,383 - HP15_1654 0.45 -0.5 1,750,598 - HP15_1654 0.83 +0.0 1,750,635 + +0.2 1,750,802 + +1.2 1,750,802 + -0.4 1,750,802 + -0.0 1,750,802 + -0.8 1,750,810 - -0.7 1,750,891 - -0.0 1,751,058 + HP15_1655 0.25 +0.6
Or see this region's nucleotide sequence