Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1586 and HP15_1587 are separated by 44 nucleotides HP15_1587 and HP15_1588 overlap by 11 nucleotides HP15_1588 and HP15_1589 are separated by 16 nucleotides HP15_1589 and HP15_1590 are separated by 258 nucleotides
HP15_1586: HP15_1586 - oxidoreductase N-terminal domain-containing protein, at 1,678,621 to 1,679,667
_1586
HP15_1587: HP15_1587 - oxidoreductase, short-chain dehydrogenase/reductase family protein, at 1,679,712 to 1,680,545
_1587
HP15_1588: HP15_1588 - HhH-GPD family protein, at 1,680,535 to 1,681,377
_1588
HP15_1589: HP15_1589 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30, at 1,681,394 to 1,681,921
_1589
HP15_1590: HP15_1590 - conserved hypothetical protein, at 1,682,180 to 1,685,119
_1590
Position (kb)
1680
1681
1682 Strain fitness (log2 ratio)
-1
0
1
2 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.536 kb on - strand, within HP15_1586 at 1679.541 kb on - strand, within HP15_1586 at 1679.686 kb on + strand at 1679.694 kb on - strand at 1679.694 kb on - strand at 1679.744 kb on + strand at 1679.775 kb on + strand at 1679.783 kb on - strand at 1679.783 kb on - strand at 1679.783 kb on - strand at 1679.808 kb on - strand, within HP15_1587 at 1679.808 kb on - strand, within HP15_1587 at 1679.901 kb on + strand, within HP15_1587 at 1679.932 kb on + strand, within HP15_1587 at 1679.940 kb on - strand, within HP15_1587 at 1679.940 kb on - strand, within HP15_1587 at 1680.006 kb on - strand, within HP15_1587 at 1680.135 kb on - strand, within HP15_1587 at 1680.148 kb on + strand, within HP15_1587 at 1680.171 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.193 kb on - strand, within HP15_1587 at 1680.311 kb on - strand, within HP15_1587 at 1680.358 kb on + strand, within HP15_1587 at 1680.403 kb on - strand, within HP15_1587 at 1680.708 kb on + strand, within HP15_1588 at 1680.956 kb on - strand, within HP15_1588 at 1681.118 kb on - strand, within HP15_1588 at 1681.356 kb on + strand at 1681.364 kb on - strand at 1681.404 kb on + strand at 1681.405 kb on - strand at 1681.417 kb on - strand at 1681.439 kb on + strand at 1681.478 kb on - strand, within HP15_1589 at 1681.515 kb on - strand, within HP15_1589 at 1681.559 kb on + strand, within HP15_1589 at 1681.605 kb on - strand, within HP15_1589 at 1681.818 kb on + strand, within HP15_1589 at 1681.818 kb on + strand, within HP15_1589 at 1681.890 kb on - strand at 1681.954 kb on + strand at 1681.954 kb on + strand at 1682.001 kb on + strand at 1682.074 kb on - strand at 1682.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,679,536 - HP15_1586 0.87 +0.2 1,679,536 - HP15_1586 0.87 -0.0 1,679,536 - HP15_1586 0.87 +1.9 1,679,536 - HP15_1586 0.87 +0.1 1,679,541 - HP15_1586 0.88 -0.0 1,679,686 + +0.4 1,679,694 - -0.4 1,679,694 - +0.2 1,679,744 + +0.2 1,679,775 + +0.1 1,679,783 - -0.1 1,679,783 - -0.3 1,679,783 - -0.0 1,679,808 - HP15_1587 0.12 +0.4 1,679,808 - HP15_1587 0.12 +0.1 1,679,901 + HP15_1587 0.23 -0.3 1,679,932 + HP15_1587 0.26 +0.8 1,679,940 - HP15_1587 0.27 -0.4 1,679,940 - HP15_1587 0.27 -0.6 1,680,006 - HP15_1587 0.35 +1.3 1,680,135 - HP15_1587 0.51 -0.0 1,680,148 + HP15_1587 0.52 -0.8 1,680,171 - HP15_1587 0.55 +0.5 1,680,193 - HP15_1587 0.58 -0.2 1,680,193 - HP15_1587 0.58 -0.5 1,680,193 - HP15_1587 0.58 +2.5 1,680,311 - HP15_1587 0.72 +0.8 1,680,358 + HP15_1587 0.77 -0.5 1,680,403 - HP15_1587 0.83 +0.7 1,680,708 + HP15_1588 0.21 -0.3 1,680,956 - HP15_1588 0.50 -0.4 1,681,118 - HP15_1588 0.69 -0.9 1,681,356 + -0.1 1,681,364 - +1.0 1,681,404 + -0.4 1,681,405 - -0.5 1,681,417 - +0.4 1,681,439 + -0.2 1,681,478 - HP15_1589 0.16 -0.4 1,681,515 - HP15_1589 0.23 -0.6 1,681,559 + HP15_1589 0.31 -0.3 1,681,605 - HP15_1589 0.40 -1.0 1,681,818 + HP15_1589 0.80 +0.6 1,681,818 + HP15_1589 0.80 +0.3 1,681,890 - +0.3 1,681,954 + -1.3 1,681,954 + +0.1 1,682,001 + -0.3 1,682,074 - +0.2 1,682,295 + +0.4
Or see this region's nucleotide sequence