Strain Fitness in Marinobacter adhaerens HP15 around HP15_1553

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1551 and HP15_1552 are separated by 110 nucleotidesHP15_1552 and HP15_1553 are separated by 28 nucleotidesHP15_1553 and HP15_1554 are separated by 66 nucleotidesHP15_1554 and HP15_tRNA30 are separated by 205 nucleotidesHP15_tRNA30 and HP15_1555 are separated by 77 nucleotides HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772 _1551 HP15_1552: HP15_1552 - conserved hypothetical protein, at 1,634,883 to 1,635,248 _1552 HP15_1553: HP15_1553 - transcription negative regulator, at 1,635,277 to 1,635,936 _1553 HP15_1554: HP15_1554 - hydrolase, isochorismatase family, at 1,636,003 to 1,636,533 _1554 HP15_tRNA30: HP15_tRNA30 - tRNA-Ser, at 1,636,739 to 1,636,829 _tRNA30 HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509 _1555 Position (kb) 1635 1636Strain fitness (log2 ratio) -1 0 1at 1634.378 kb on - strand, within HP15_1551at 1634.389 kb on - strand, within HP15_1551at 1634.722 kb on - strandat 1634.748 kb on + strandat 1634.888 kb on - strandat 1634.948 kb on + strand, within HP15_1552at 1634.948 kb on + strand, within HP15_1552at 1634.950 kb on + strand, within HP15_1552at 1635.002 kb on - strand, within HP15_1552at 1635.176 kb on - strand, within HP15_1552at 1635.250 kb on - strandat 1635.252 kb on + strandat 1635.260 kb on - strandat 1635.260 kb on - strandat 1635.260 kb on - strandat 1635.338 kb on + strandat 1635.357 kb on + strand, within HP15_1553at 1635.357 kb on + strand, within HP15_1553at 1635.365 kb on - strand, within HP15_1553at 1635.796 kb on - strand, within HP15_1553at 1635.806 kb on - strand, within HP15_1553at 1635.943 kb on + strandat 1636.022 kb on - strandat 1636.091 kb on - strand, within HP15_1554at 1636.205 kb on - strand, within HP15_1554at 1636.380 kb on + strand, within HP15_1554at 1636.388 kb on - strand, within HP15_1554at 1636.441 kb on + strand, within HP15_1554at 1636.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,634,378 - HP15_1551 0.56 +0.2
1,634,389 - HP15_1551 0.57 +1.4
1,634,722 - -0.1
1,634,748 + +0.5
1,634,888 - +0.9
1,634,948 + HP15_1552 0.18 +0.6
1,634,948 + HP15_1552 0.18 -0.3
1,634,950 + HP15_1552 0.18 +0.5
1,635,002 - HP15_1552 0.33 +1.4
1,635,176 - HP15_1552 0.80 -0.1
1,635,250 - +0.6
1,635,252 + -0.3
1,635,260 - -0.0
1,635,260 - -0.8
1,635,260 - -0.5
1,635,338 + +1.0
1,635,357 + HP15_1553 0.12 -1.0
1,635,357 + HP15_1553 0.12 +0.6
1,635,365 - HP15_1553 0.13 +0.2
1,635,796 - HP15_1553 0.79 +0.5
1,635,806 - HP15_1553 0.80 +1.3
1,635,943 + +0.7
1,636,022 - -0.3
1,636,091 - HP15_1554 0.17 -0.7
1,636,205 - HP15_1554 0.38 -0.4
1,636,380 + HP15_1554 0.71 +1.7
1,636,388 - HP15_1554 0.73 -1.7
1,636,441 + HP15_1554 0.82 -0.0
1,636,887 - -0.1

Or see this region's nucleotide sequence