Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1551 and HP15_1552 are separated by 110 nucleotides HP15_1552 and HP15_1553 are separated by 28 nucleotides HP15_1553 and HP15_1554 are separated by 66 nucleotides HP15_1554 and HP15_tRNA30 are separated by 205 nucleotides HP15_tRNA30 and HP15_1555 are separated by 77 nucleotides
HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772
_1551
HP15_1552: HP15_1552 - conserved hypothetical protein, at 1,634,883 to 1,635,248
_1552
HP15_1553: HP15_1553 - transcription negative regulator, at 1,635,277 to 1,635,936
_1553
HP15_1554: HP15_1554 - hydrolase, isochorismatase family, at 1,636,003 to 1,636,533
_1554
HP15_tRNA30: HP15_tRNA30 - tRNA-Ser, at 1,636,739 to 1,636,829
_tRNA30
HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509
_1555
Position (kb)
1635
1636 Strain fitness (log2 ratio)
-1
0
1 at 1634.378 kb on - strand, within HP15_1551 at 1634.389 kb on - strand, within HP15_1551 at 1634.722 kb on - strand at 1634.748 kb on + strand at 1634.888 kb on - strand at 1634.948 kb on + strand, within HP15_1552 at 1634.948 kb on + strand, within HP15_1552 at 1634.950 kb on + strand, within HP15_1552 at 1635.002 kb on - strand, within HP15_1552 at 1635.176 kb on - strand, within HP15_1552 at 1635.250 kb on - strand at 1635.252 kb on + strand at 1635.260 kb on - strand at 1635.260 kb on - strand at 1635.260 kb on - strand at 1635.338 kb on + strand at 1635.357 kb on + strand, within HP15_1553 at 1635.357 kb on + strand, within HP15_1553 at 1635.365 kb on - strand, within HP15_1553 at 1635.796 kb on - strand, within HP15_1553 at 1635.806 kb on - strand, within HP15_1553 at 1635.943 kb on + strand at 1636.022 kb on - strand at 1636.091 kb on - strand, within HP15_1554 at 1636.205 kb on - strand, within HP15_1554 at 1636.380 kb on + strand, within HP15_1554 at 1636.388 kb on - strand, within HP15_1554 at 1636.441 kb on + strand, within HP15_1554 at 1636.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,634,378 - HP15_1551 0.56 +0.2 1,634,389 - HP15_1551 0.57 +1.4 1,634,722 - -0.1 1,634,748 + +0.5 1,634,888 - +0.9 1,634,948 + HP15_1552 0.18 +0.6 1,634,948 + HP15_1552 0.18 -0.3 1,634,950 + HP15_1552 0.18 +0.5 1,635,002 - HP15_1552 0.33 +1.4 1,635,176 - HP15_1552 0.80 -0.1 1,635,250 - +0.6 1,635,252 + -0.3 1,635,260 - -0.0 1,635,260 - -0.8 1,635,260 - -0.5 1,635,338 + +1.0 1,635,357 + HP15_1553 0.12 -1.0 1,635,357 + HP15_1553 0.12 +0.6 1,635,365 - HP15_1553 0.13 +0.2 1,635,796 - HP15_1553 0.79 +0.5 1,635,806 - HP15_1553 0.80 +1.3 1,635,943 + +0.7 1,636,022 - -0.3 1,636,091 - HP15_1554 0.17 -0.7 1,636,205 - HP15_1554 0.38 -0.4 1,636,380 + HP15_1554 0.71 +1.7 1,636,388 - HP15_1554 0.73 -1.7 1,636,441 + HP15_1554 0.82 -0.0 1,636,887 - -0.1
Or see this region's nucleotide sequence