Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1526 and HP15_1528 are separated by 59 nucleotides HP15_1528 and HP15_1529 are separated by 42 nucleotides HP15_1529 and HP15_1530 are separated by 39 nucleotides
HP15_1526: HP15_1526 - tryptophanyl-tRNA synthetase, at 1,608,818 to 1,609,993
_1526
HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886
_1528
HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567
_1529
HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590
_1530
Position (kb)
1610
1611
1612 Strain fitness (log2 ratio)
-1
0
1
2 at 1610.195 kb on + strand, within HP15_1528 at 1610.203 kb on - strand, within HP15_1528 at 1610.532 kb on - strand, within HP15_1528 at 1610.564 kb on + strand, within HP15_1528 at 1610.798 kb on + strand, within HP15_1528 at 1610.808 kb on + strand at 1610.946 kb on + strand at 1611.074 kb on - strand, within HP15_1529 at 1611.316 kb on + strand, within HP15_1529 at 1611.366 kb on - strand, within HP15_1529 at 1611.643 kb on + strand at 1611.676 kb on - strand at 1611.853 kb on + strand, within HP15_1530 at 1611.853 kb on + strand, within HP15_1530 at 1611.911 kb on + strand, within HP15_1530 at 1612.092 kb on - strand, within HP15_1530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,610,195 + HP15_1528 0.17 +1.9 1,610,203 - HP15_1528 0.18 +0.8 1,610,532 - HP15_1528 0.57 +0.5 1,610,564 + HP15_1528 0.61 -1.0 1,610,798 + HP15_1528 0.89 -0.3 1,610,808 + +0.2 1,610,946 + +0.2 1,611,074 - HP15_1529 0.23 -0.1 1,611,316 + HP15_1529 0.61 +0.0 1,611,366 - HP15_1529 0.68 +1.4 1,611,643 + -0.0 1,611,676 - +0.7 1,611,853 + HP15_1530 0.25 +0.2 1,611,853 + HP15_1530 0.25 +0.0 1,611,911 + HP15_1530 0.31 +0.7 1,612,092 - HP15_1530 0.49 +1.5
Or see this region's nucleotide sequence