Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1471 and HP15_1472 are separated by 82 nucleotides HP15_1472 and HP15_1473 are separated by 19 nucleotides HP15_1473 and HP15_1474 overlap by 4 nucleotides
HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923
_1471
HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794
_1472
HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515
_1473
HP15_1474: HP15_1474 - flagellar P-ring protein precursor I, at 1,548,512 to 1,549,609
_1474
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-1
0
1 at 1546.828 kb on - strand, within HP15_1471 at 1546.836 kb on - strand, within HP15_1471 at 1546.925 kb on - strand at 1546.928 kb on + strand at 1546.959 kb on - strand at 1547.010 kb on + strand at 1547.022 kb on + strand at 1547.089 kb on + strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.121 kb on - strand, within HP15_1472 at 1547.216 kb on + strand, within HP15_1472 at 1547.219 kb on - strand, within HP15_1472 at 1547.396 kb on + strand, within HP15_1472 at 1547.401 kb on + strand, within HP15_1472 at 1547.560 kb on - strand, within HP15_1472 at 1547.578 kb on + strand, within HP15_1472 at 1547.596 kb on - strand, within HP15_1472 at 1547.637 kb on - strand, within HP15_1472 at 1547.651 kb on - strand, within HP15_1472 at 1547.668 kb on + strand, within HP15_1472 at 1547.673 kb on + strand, within HP15_1472 at 1547.733 kb on + strand at 1547.785 kb on - strand at 1547.830 kb on + strand at 1547.831 kb on + strand at 1547.839 kb on - strand at 1547.922 kb on + strand, within HP15_1473 at 1547.930 kb on - strand, within HP15_1473 at 1547.940 kb on - strand, within HP15_1473 at 1547.968 kb on - strand, within HP15_1473 at 1548.064 kb on + strand, within HP15_1473 at 1548.326 kb on + strand, within HP15_1473 at 1548.347 kb on - strand, within HP15_1473 at 1548.365 kb on - strand, within HP15_1473 at 1548.375 kb on - strand, within HP15_1473 at 1548.442 kb on - strand, within HP15_1473 at 1548.547 kb on - strand at 1548.609 kb on - strand at 1548.907 kb on + strand, within HP15_1474 at 1548.907 kb on + strand, within HP15_1474 at 1548.915 kb on - strand, within HP15_1474 at 1548.915 kb on - strand, within HP15_1474 at 1548.920 kb on + strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.928 kb on - strand, within HP15_1474 at 1548.938 kb on - strand, within HP15_1474 at 1548.954 kb on + strand, within HP15_1474 at 1548.996 kb on + strand, within HP15_1474 at 1549.036 kb on - strand, within HP15_1474 at 1549.065 kb on - strand, within HP15_1474 at 1549.071 kb on - strand, within HP15_1474 at 1549.073 kb on - strand, within HP15_1474 at 1549.103 kb on + strand, within HP15_1474 at 1549.122 kb on - strand, within HP15_1474 at 1549.159 kb on - strand, within HP15_1474 at 1549.205 kb on - strand, within HP15_1474 at 1549.316 kb on + strand, within HP15_1474 at 1549.324 kb on - strand, within HP15_1474 at 1549.362 kb on - strand, within HP15_1474 at 1549.383 kb on - strand, within HP15_1474 at 1549.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,546,828 - HP15_1471 0.87 -0.3 1,546,836 - HP15_1471 0.88 +0.6 1,546,925 - +0.2 1,546,928 + -0.1 1,546,959 - -0.4 1,547,010 + +0.3 1,547,022 + +0.3 1,547,089 + HP15_1472 0.11 +0.6 1,547,121 - HP15_1472 0.15 +0.8 1,547,121 - HP15_1472 0.15 +0.1 1,547,121 - HP15_1472 0.15 +1.1 1,547,121 - HP15_1472 0.15 +0.3 1,547,121 - HP15_1472 0.15 +0.3 1,547,216 + HP15_1472 0.27 -0.3 1,547,219 - HP15_1472 0.27 +0.2 1,547,396 + HP15_1472 0.49 -0.2 1,547,401 + HP15_1472 0.50 +1.4 1,547,560 - HP15_1472 0.70 +0.1 1,547,578 + HP15_1472 0.72 +0.3 1,547,596 - HP15_1472 0.75 +0.7 1,547,637 - HP15_1472 0.80 +0.1 1,547,651 - HP15_1472 0.82 -0.0 1,547,668 + HP15_1472 0.84 +0.4 1,547,673 + HP15_1472 0.85 +1.4 1,547,733 + -0.1 1,547,785 - -0.4 1,547,830 + +1.1 1,547,831 + +0.8 1,547,839 - +0.4 1,547,922 + HP15_1473 0.15 +0.1 1,547,930 - HP15_1473 0.17 +0.6 1,547,940 - HP15_1473 0.18 +0.2 1,547,968 - HP15_1473 0.22 +0.4 1,548,064 + HP15_1473 0.36 +1.5 1,548,326 + HP15_1473 0.73 +1.2 1,548,347 - HP15_1473 0.76 -0.0 1,548,365 - HP15_1473 0.78 +0.2 1,548,375 - HP15_1473 0.80 +1.4 1,548,442 - HP15_1473 0.89 +0.8 1,548,547 - -0.1 1,548,609 - +0.3 1,548,907 + HP15_1474 0.36 +0.6 1,548,907 + HP15_1474 0.36 +0.4 1,548,915 - HP15_1474 0.37 +0.4 1,548,915 - HP15_1474 0.37 -0.1 1,548,920 + HP15_1474 0.37 +0.5 1,548,928 - HP15_1474 0.38 +0.1 1,548,928 - HP15_1474 0.38 +0.7 1,548,928 - HP15_1474 0.38 +0.1 1,548,928 - HP15_1474 0.38 +0.5 1,548,938 - HP15_1474 0.39 +0.6 1,548,954 + HP15_1474 0.40 -0.1 1,548,996 + HP15_1474 0.44 -0.3 1,549,036 - HP15_1474 0.48 -0.7 1,549,065 - HP15_1474 0.50 +0.1 1,549,071 - HP15_1474 0.51 +0.5 1,549,073 - HP15_1474 0.51 +1.1 1,549,103 + HP15_1474 0.54 +0.8 1,549,122 - HP15_1474 0.56 +0.3 1,549,159 - HP15_1474 0.59 +0.3 1,549,205 - HP15_1474 0.63 +0.2 1,549,316 + HP15_1474 0.73 -0.8 1,549,324 - HP15_1474 0.74 +0.4 1,549,362 - HP15_1474 0.77 +0.1 1,549,383 - HP15_1474 0.79 -0.1 1,549,414 + +0.4
Or see this region's nucleotide sequence