Strain Fitness in Marinobacter adhaerens HP15 around HP15_1473

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1471 and HP15_1472 are separated by 82 nucleotidesHP15_1472 and HP15_1473 are separated by 19 nucleotidesHP15_1473 and HP15_1474 overlap by 4 nucleotides HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923 _1471 HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794 _1472 HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515 _1473 HP15_1474: HP15_1474 - flagellar P-ring protein precursor I, at 1,548,512 to 1,549,609 _1474 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -1 0 1at 1546.828 kb on - strand, within HP15_1471at 1546.836 kb on - strand, within HP15_1471at 1546.925 kb on - strandat 1546.928 kb on + strandat 1546.959 kb on - strandat 1547.010 kb on + strandat 1547.022 kb on + strandat 1547.089 kb on + strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.216 kb on + strand, within HP15_1472at 1547.219 kb on - strand, within HP15_1472at 1547.396 kb on + strand, within HP15_1472at 1547.401 kb on + strand, within HP15_1472at 1547.560 kb on - strand, within HP15_1472at 1547.578 kb on + strand, within HP15_1472at 1547.596 kb on - strand, within HP15_1472at 1547.637 kb on - strand, within HP15_1472at 1547.651 kb on - strand, within HP15_1472at 1547.668 kb on + strand, within HP15_1472at 1547.673 kb on + strand, within HP15_1472at 1547.733 kb on + strandat 1547.785 kb on - strandat 1547.830 kb on + strandat 1547.831 kb on + strandat 1547.839 kb on - strandat 1547.922 kb on + strand, within HP15_1473at 1547.930 kb on - strand, within HP15_1473at 1547.940 kb on - strand, within HP15_1473at 1547.968 kb on - strand, within HP15_1473at 1548.064 kb on + strand, within HP15_1473at 1548.326 kb on + strand, within HP15_1473at 1548.347 kb on - strand, within HP15_1473at 1548.365 kb on - strand, within HP15_1473at 1548.375 kb on - strand, within HP15_1473at 1548.442 kb on - strand, within HP15_1473at 1548.547 kb on - strandat 1548.609 kb on - strandat 1548.907 kb on + strand, within HP15_1474at 1548.907 kb on + strand, within HP15_1474at 1548.915 kb on - strand, within HP15_1474at 1548.915 kb on - strand, within HP15_1474at 1548.920 kb on + strand, within HP15_1474at 1548.928 kb on - strand, within HP15_1474at 1548.928 kb on - strand, within HP15_1474at 1548.928 kb on - strand, within HP15_1474at 1548.928 kb on - strand, within HP15_1474at 1548.938 kb on - strand, within HP15_1474at 1548.954 kb on + strand, within HP15_1474at 1548.996 kb on + strand, within HP15_1474at 1549.036 kb on - strand, within HP15_1474at 1549.065 kb on - strand, within HP15_1474at 1549.071 kb on - strand, within HP15_1474at 1549.073 kb on - strand, within HP15_1474at 1549.103 kb on + strand, within HP15_1474at 1549.122 kb on - strand, within HP15_1474at 1549.159 kb on - strand, within HP15_1474at 1549.205 kb on - strand, within HP15_1474at 1549.316 kb on + strand, within HP15_1474at 1549.324 kb on - strand, within HP15_1474at 1549.362 kb on - strand, within HP15_1474at 1549.383 kb on - strand, within HP15_1474at 1549.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,546,828 - HP15_1471 0.87 -0.3
1,546,836 - HP15_1471 0.88 +0.6
1,546,925 - +0.2
1,546,928 + -0.1
1,546,959 - -0.4
1,547,010 + +0.3
1,547,022 + +0.3
1,547,089 + HP15_1472 0.11 +0.6
1,547,121 - HP15_1472 0.15 +0.8
1,547,121 - HP15_1472 0.15 +0.1
1,547,121 - HP15_1472 0.15 +1.1
1,547,121 - HP15_1472 0.15 +0.3
1,547,121 - HP15_1472 0.15 +0.3
1,547,216 + HP15_1472 0.27 -0.3
1,547,219 - HP15_1472 0.27 +0.2
1,547,396 + HP15_1472 0.49 -0.2
1,547,401 + HP15_1472 0.50 +1.4
1,547,560 - HP15_1472 0.70 +0.1
1,547,578 + HP15_1472 0.72 +0.3
1,547,596 - HP15_1472 0.75 +0.7
1,547,637 - HP15_1472 0.80 +0.1
1,547,651 - HP15_1472 0.82 -0.0
1,547,668 + HP15_1472 0.84 +0.4
1,547,673 + HP15_1472 0.85 +1.4
1,547,733 + -0.1
1,547,785 - -0.4
1,547,830 + +1.1
1,547,831 + +0.8
1,547,839 - +0.4
1,547,922 + HP15_1473 0.15 +0.1
1,547,930 - HP15_1473 0.17 +0.6
1,547,940 - HP15_1473 0.18 +0.2
1,547,968 - HP15_1473 0.22 +0.4
1,548,064 + HP15_1473 0.36 +1.5
1,548,326 + HP15_1473 0.73 +1.2
1,548,347 - HP15_1473 0.76 -0.0
1,548,365 - HP15_1473 0.78 +0.2
1,548,375 - HP15_1473 0.80 +1.4
1,548,442 - HP15_1473 0.89 +0.8
1,548,547 - -0.1
1,548,609 - +0.3
1,548,907 + HP15_1474 0.36 +0.6
1,548,907 + HP15_1474 0.36 +0.4
1,548,915 - HP15_1474 0.37 +0.4
1,548,915 - HP15_1474 0.37 -0.1
1,548,920 + HP15_1474 0.37 +0.5
1,548,928 - HP15_1474 0.38 +0.1
1,548,928 - HP15_1474 0.38 +0.7
1,548,928 - HP15_1474 0.38 +0.1
1,548,928 - HP15_1474 0.38 +0.5
1,548,938 - HP15_1474 0.39 +0.6
1,548,954 + HP15_1474 0.40 -0.1
1,548,996 + HP15_1474 0.44 -0.3
1,549,036 - HP15_1474 0.48 -0.7
1,549,065 - HP15_1474 0.50 +0.1
1,549,071 - HP15_1474 0.51 +0.5
1,549,073 - HP15_1474 0.51 +1.1
1,549,103 + HP15_1474 0.54 +0.8
1,549,122 - HP15_1474 0.56 +0.3
1,549,159 - HP15_1474 0.59 +0.3
1,549,205 - HP15_1474 0.63 +0.2
1,549,316 + HP15_1474 0.73 -0.8
1,549,324 - HP15_1474 0.74 +0.4
1,549,362 - HP15_1474 0.77 +0.1
1,549,383 - HP15_1474 0.79 -0.1
1,549,414 + +0.4

Or see this region's nucleotide sequence