Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27655 and BWI76_RS27660 are separated by 260 nucleotides BWI76_RS27660 and BWI76_RS27665 overlap by 1 nucleotides BWI76_RS27665 and BWI76_RS27670 are separated by 102 nucleotides
BWI76_RS27655: BWI76_RS27655 - lipoprotein NlpA, at 5,737,806 to 5,738,615
_RS27655
BWI76_RS27660: BWI76_RS27660 - hypothetical protein, at 5,738,876 to 5,739,346
_RS27660
BWI76_RS27665: BWI76_RS27665 - phosphatase, at 5,739,346 to 5,739,972
_RS27665
BWI76_RS27670: BWI76_RS27670 - LysR family transcriptional regulator, at 5,740,075 to 5,740,989
_RS27670
Position (kb) 5738
5739
5740 Strain fitness (log2 ratio) -2
-1
0
1 at 5737.879 kb on - strand at 5737.888 kb on - strand, within BWI76_RS27655 at 5738.147 kb on + strand, within BWI76_RS27655 at 5738.289 kb on + strand, within BWI76_RS27655 at 5738.296 kb on + strand, within BWI76_RS27655 at 5738.340 kb on - strand, within BWI76_RS27655 at 5738.443 kb on - strand, within BWI76_RS27655 at 5738.490 kb on + strand, within BWI76_RS27655 at 5738.503 kb on + strand, within BWI76_RS27655 at 5738.518 kb on + strand, within BWI76_RS27655 at 5738.526 kb on - strand, within BWI76_RS27655 at 5738.526 kb on - strand, within BWI76_RS27655 at 5738.539 kb on + strand at 5738.565 kb on + strand at 5738.675 kb on + strand at 5738.775 kb on - strand at 5738.800 kb on + strand at 5738.843 kb on + strand at 5738.844 kb on - strand at 5738.844 kb on - strand at 5738.896 kb on + strand at 5738.992 kb on + strand, within BWI76_RS27660 at 5739.125 kb on - strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.261 kb on - strand, within BWI76_RS27660 at 5739.319 kb on - strand at 5739.425 kb on + strand, within BWI76_RS27665 at 5739.428 kb on - strand, within BWI76_RS27665 at 5739.442 kb on + strand, within BWI76_RS27665 at 5739.452 kb on + strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand at 5739.484 kb on - strand, within BWI76_RS27665 at 5739.494 kb on - strand, within BWI76_RS27665 at 5739.541 kb on - strand, within BWI76_RS27665 at 5739.586 kb on + strand, within BWI76_RS27665 at 5739.591 kb on + strand, within BWI76_RS27665 at 5739.683 kb on + strand, within BWI76_RS27665 at 5739.723 kb on + strand, within BWI76_RS27665 at 5739.810 kb on + strand, within BWI76_RS27665 at 5739.968 kb on + strand at 5740.167 kb on - strand, within BWI76_RS27670 at 5740.297 kb on + strand, within BWI76_RS27670
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x remove 5,737,879 - -0.0 5,737,888 - BWI76_RS27655 0.10 -0.9 5,738,147 + BWI76_RS27655 0.42 +0.0 5,738,289 + BWI76_RS27655 0.60 -0.1 5,738,296 + BWI76_RS27655 0.60 -0.8 5,738,340 - BWI76_RS27655 0.66 -0.4 5,738,443 - BWI76_RS27655 0.79 -0.5 5,738,490 + BWI76_RS27655 0.84 +0.1 5,738,503 + BWI76_RS27655 0.86 -0.3 5,738,518 + BWI76_RS27655 0.88 +0.2 5,738,526 - BWI76_RS27655 0.89 -0.3 5,738,526 - BWI76_RS27655 0.89 -0.4 5,738,539 + -0.1 5,738,565 + +0.8 5,738,675 + +0.2 5,738,775 - -0.0 5,738,800 + -2.3 5,738,843 + -0.8 5,738,844 - -1.2 5,738,844 - -0.0 5,738,896 + -0.3 5,738,992 + BWI76_RS27660 0.25 +0.8 5,739,125 - BWI76_RS27660 0.53 -0.2 5,739,228 + BWI76_RS27660 0.75 +0.2 5,739,228 + BWI76_RS27660 0.75 -0.8 5,739,228 + BWI76_RS27660 0.75 +0.4 5,739,228 + BWI76_RS27660 0.75 -1.0 5,739,236 - BWI76_RS27660 0.76 +0.9 5,739,236 - BWI76_RS27660 0.76 +0.1 5,739,236 - BWI76_RS27660 0.76 -0.2 5,739,236 - BWI76_RS27660 0.76 +0.7 5,739,261 - BWI76_RS27660 0.82 -0.3 5,739,319 - -1.2 5,739,425 + BWI76_RS27665 0.13 +0.1 5,739,428 - BWI76_RS27665 0.13 +0.1 5,739,442 + BWI76_RS27665 0.15 +0.1 5,739,452 + BWI76_RS27665 0.17 -0.7 5,739,460 - BWI76_RS27665 0.18 -0.2 5,739,460 - BWI76_RS27665 0.18 -0.3 5,739,460 - +1.4 5,739,484 - BWI76_RS27665 0.22 +0.2 5,739,494 - BWI76_RS27665 0.24 -1.5 5,739,541 - BWI76_RS27665 0.31 +0.2 5,739,586 + BWI76_RS27665 0.38 -0.4 5,739,591 + BWI76_RS27665 0.39 -0.2 5,739,683 + BWI76_RS27665 0.54 +0.0 5,739,723 + BWI76_RS27665 0.60 -0.2 5,739,810 + BWI76_RS27665 0.74 -0.5 5,739,968 + +0.0 5,740,167 - BWI76_RS27670 0.10 +0.4 5,740,297 + BWI76_RS27670 0.24 -0.0
Or see this region's nucleotide sequence