Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04395 and BWI76_RS04400 are separated by 92 nucleotides BWI76_RS04400 and BWI76_RS04405 are separated by 44 nucleotides BWI76_RS04405 and BWI76_RS04410 overlap by 8 nucleotides
BWI76_RS04390: BWI76_RS04390 - DUF805 domain-containing protein, at 906,636 to 906,998
_RS04390
BWI76_RS04395: BWI76_RS04395 - putative HTH-type transcriptional regulator, at 906,931 to 907,875
_RS04395
BWI76_RS04400: BWI76_RS04400 - alanyl-tRNA synthetase, at 907,968 to 908,597
_RS04400
BWI76_RS04405: BWI76_RS04405 - response regulator, at 908,642 to 909,340
_RS04405
BWI76_RS04410: BWI76_RS04410 - signal transduction histidine kinase regulating citrate/malate metabolism, at 909,333 to 910,961
_RS04410
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1 at 906.968 kb on - strand at 906.978 kb on - strand at 907.036 kb on - strand, within BWI76_RS04395 at 907.055 kb on + strand, within BWI76_RS04395 at 907.060 kb on - strand, within BWI76_RS04395 at 907.073 kb on - strand, within BWI76_RS04395 at 907.197 kb on + strand, within BWI76_RS04395 at 907.425 kb on + strand, within BWI76_RS04395 at 907.457 kb on - strand, within BWI76_RS04395 at 907.735 kb on + strand, within BWI76_RS04395 at 907.749 kb on - strand, within BWI76_RS04395 at 907.957 kb on + strand at 907.964 kb on + strand at 908.164 kb on + strand, within BWI76_RS04400 at 908.177 kb on - strand, within BWI76_RS04400 at 908.247 kb on + strand, within BWI76_RS04400 at 908.273 kb on + strand at 908.321 kb on - strand, within BWI76_RS04400 at 908.336 kb on - strand, within BWI76_RS04400 at 908.365 kb on - strand, within BWI76_RS04400 at 908.497 kb on - strand, within BWI76_RS04400 at 908.509 kb on + strand, within BWI76_RS04400 at 908.595 kb on - strand at 908.740 kb on + strand, within BWI76_RS04405 at 908.753 kb on - strand, within BWI76_RS04405 at 908.753 kb on - strand, within BWI76_RS04405 at 908.836 kb on - strand, within BWI76_RS04405 at 908.843 kb on + strand, within BWI76_RS04405 at 908.850 kb on - strand, within BWI76_RS04405 at 908.855 kb on + strand, within BWI76_RS04405 at 908.910 kb on + strand, within BWI76_RS04405 at 908.956 kb on + strand, within BWI76_RS04405 at 909.112 kb on + strand, within BWI76_RS04405 at 909.170 kb on - strand, within BWI76_RS04405 at 909.186 kb on + strand, within BWI76_RS04405 at 909.204 kb on - strand, within BWI76_RS04405 at 909.238 kb on - strand, within BWI76_RS04405 at 909.257 kb on - strand, within BWI76_RS04405 at 909.273 kb on + strand at 909.298 kb on + strand at 909.306 kb on - strand at 909.325 kb on + strand at 909.333 kb on - strand at 909.447 kb on - strand at 909.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x remove 906,968 - -0.4 906,978 - -0.0 907,036 - BWI76_RS04395 0.11 -0.7 907,055 + BWI76_RS04395 0.13 -0.4 907,060 - BWI76_RS04395 0.14 -0.4 907,073 - BWI76_RS04395 0.15 -0.2 907,197 + BWI76_RS04395 0.28 +0.9 907,425 + BWI76_RS04395 0.52 +0.5 907,457 - BWI76_RS04395 0.56 +0.6 907,735 + BWI76_RS04395 0.85 +0.1 907,749 - BWI76_RS04395 0.87 -0.6 907,957 + -0.3 907,964 + -0.4 908,164 + BWI76_RS04400 0.31 -0.3 908,177 - BWI76_RS04400 0.33 +0.9 908,247 + BWI76_RS04400 0.44 +0.0 908,273 + +1.5 908,321 - BWI76_RS04400 0.56 +0.2 908,336 - BWI76_RS04400 0.58 -0.1 908,365 - BWI76_RS04400 0.63 -0.0 908,497 - BWI76_RS04400 0.84 +0.3 908,509 + BWI76_RS04400 0.86 +0.5 908,595 - -0.1 908,740 + BWI76_RS04405 0.14 -0.2 908,753 - BWI76_RS04405 0.16 -1.1 908,753 - BWI76_RS04405 0.16 +0.0 908,836 - BWI76_RS04405 0.28 +0.5 908,843 + BWI76_RS04405 0.29 +0.5 908,850 - BWI76_RS04405 0.30 -0.2 908,855 + BWI76_RS04405 0.30 +0.3 908,910 + BWI76_RS04405 0.38 +0.3 908,956 + BWI76_RS04405 0.45 -0.3 909,112 + BWI76_RS04405 0.67 -0.6 909,170 - BWI76_RS04405 0.76 +0.3 909,186 + BWI76_RS04405 0.78 -0.2 909,204 - BWI76_RS04405 0.80 -0.1 909,238 - BWI76_RS04405 0.85 -0.4 909,257 - BWI76_RS04405 0.88 -0.0 909,273 + -0.8 909,298 + -0.1 909,306 - +0.1 909,325 + +0.1 909,333 - -0.4 909,447 - -0.3 909,449 + -0.1
Or see this region's nucleotide sequence