Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2999

Experiment: BHIS with Trimethoprim 0.00625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Trimethoprim 0.00625 mM
3,777,969	-		BT2997	0.46	-0.8
3,777,969	-		BT2997	0.46	-1.7
3,777,969	-		BT2997	0.46	+1.8
3,777,981	-		BT2997	0.48	-2.5
3,777,981	-		BT2997	0.48	+0.2
3,777,987	-		BT2997	0.49	-2.7
3,777,997	+		BT2997	0.51	+1.8
3,777,998	-		BT2997	0.51	-1.5
3,777,998	-		BT2997	0.51	+2.2
3,778,002	+		BT2997	0.52	+2.2
3,778,002	+		BT2997	0.52	+2.5
3,778,002	+		BT2997	0.52	+2.0
3,778,002	+		BT2997	0.52	-0.8
3,778,002	+		BT2997	0.52	+2.2
3,778,003	-		BT2997	0.52	+2.5
3,778,003	-		BT2997	0.52	-0.9
3,778,005	-		BT2997	0.53	-2.1
3,778,005	-		BT2997	0.53	-2.3
3,778,033	-		BT2997	0.58	-0.6
3,778,050	+		BT2997	0.62	-0.5
3,778,050	+		BT2997	0.62	+0.5
3,778,054	+		BT2997	0.63	-0.4
3,778,075	-		BT2997	0.67	-0.9
3,778,086	-		BT2997	0.69	-3.4
3,778,086	-		BT2997	0.69	-0.5
3,778,092	+		BT2997	0.70	-1.9
3,778,098	-		BT2997	0.71	-0.9
3,778,098	-		BT2997	0.71	-2.2
3,778,103	+		BT2997	0.72	-1.8
3,778,110	-		BT2997	0.74	-0.8
3,778,203	+				-1.4
3,778,247	+				-3.0
3,778,248	-				-2.4
3,778,310	+				-1.4
3,778,323	+				+1.7
3,778,324	-				-2.3
3,778,335	+				-2.1
3,778,336	-				+0.7
3,778,350	-		BT2998	0.12	-0.5
3,778,360	-		BT2998	0.13	-1.6
3,778,364	+		BT2998	0.14	-0.8
3,778,383	-		BT2998	0.17	-0.7
3,778,399	+		BT2998	0.19	+0.6
3,778,399	+		BT2998	0.19	-1.8
3,778,500	-		BT2998	0.35	-0.1
3,778,500	-		BT2998	0.35	+0.6
3,778,511	+		BT2998	0.36	+1.7
3,778,511	+		BT2998	0.36	+0.6
3,778,528	-		BT2998	0.39	-0.3
3,778,529	+		BT2998	0.39	-2.4
3,778,530	-		BT2998	0.39	+0.2
3,778,575	+		BT2998	0.46	-0.3
3,778,577	+		BT2998	0.46	+1.3
3,778,641	-		BT2998	0.56	+1.2
3,778,643	+		BT2998	0.56	+0.2
3,778,643	+		BT2998	0.56	+0.8
3,778,682	+		BT2998	0.62	-1.5
3,778,682	+		BT2998	0.62	-1.1
3,778,684	+		BT2998	0.62	+0.8
3,778,691	-		BT2998	0.63	-1.8
3,778,726	-		BT2998	0.69	+2.8
3,778,727	+		BT2998	0.69	-0.2
3,778,727	+		BT2998	0.69	+2.6
3,778,727	+		BT2998	0.69	-0.4
3,778,730	+		BT2998	0.69	-1.0
3,778,746	-		BT2998	0.72	-0.4
3,778,751	-		BT2998	0.73	+1.4
3,778,766	-		BT2998	0.75	+3.3
3,778,774	-		BT2998	0.76	-1.3
3,778,775	-		BT2998	0.76	-2.2
3,778,780	+		BT2998	0.77	-1.0
3,778,781	-		BT2998	0.77	-1.3
3,778,829	+		BT2998	0.84	+2.2
3,778,829	+		BT2998	0.84	-1.1
3,778,829	+		BT2998	0.84	-1.0
3,778,833	+		BT2998	0.85	-1.4
3,778,833	+		BT2998	0.85	+0.9
3,778,840	-		BT2998	0.86	-2.2
3,778,840	-		BT2998	0.86	-1.2
3,778,842	+		BT2998	0.86	-2.0
3,778,849	+		BT2998	0.87	-1.0
3,778,850	-		BT2998	0.88	+0.2
3,778,856	+		BT2998	0.88	-1.3
3,778,857	-		BT2998	0.89	-1.3
3,778,859	+		BT2998	0.89	+1.7
3,778,860	-		BT2998	0.89	-0.8
3,778,868	+				+1.7
3,778,869	-				+2.3
3,778,890	-				+0.2
3,778,905	+				+1.7
3,778,906	-				-2.6
3,778,906	-				+2.3
3,778,908	-				-3.0
3,778,908	-				+0.0
3,778,908	-				-1.7
3,778,929	+				-0.4
3,778,937	-				-2.9
3,778,966	+				-0.5
3,779,000	-				-3.3
3,779,002	+				-1.2
3,779,070	+				-3.4
3,779,071	-				+0.6
3,779,071	-				-2.2
3,779,089	-				-0.4
3,779,115	-				+0.2
3,779,221	+		BT2999	0.10	-0.6
3,779,222	-		BT2999	0.11	-0.8
3,779,318	+		BT2999	0.14	-2.2
3,779,319	-		BT2999	0.14	-0.8
3,779,345	+		BT2999	0.15	+0.2
3,779,346	-				-2.4
3,779,368	+		BT2999	0.16	+1.2
3,779,464	+		BT2999	0.20	-0.8
3,779,475	-		BT2999	0.20	-1.9
3,779,502	-		BT2999	0.21	-0.3
3,779,502	-		BT2999	0.21	-1.3
3,779,521	-		BT2999	0.22	-2.0
3,779,521	-		BT2999	0.22	-1.1
3,779,631	+		BT2999	0.26	+0.2
3,779,633	+		BT2999	0.26	-0.7
3,779,633	+		BT2999	0.26	-3.0
3,779,634	-		BT2999	0.26	+3.4
3,779,634	-		BT2999	0.26	-1.5
3,779,657	+		BT2999	0.27	+2.0
3,779,657	+		BT2999	0.27	-0.2
3,779,657	+		BT2999	0.27	-0.8
3,779,690	+		BT2999	0.28	-1.6
3,779,691	-		BT2999	0.28	-1.5
3,779,691	-		BT2999	0.28	+1.6
3,779,693	-		BT2999	0.29	-2.3
3,779,713	+		BT2999	0.29	+0.2
3,779,714	-		BT2999	0.29	+0.6
3,779,720	-		BT2999	0.30	-1.0
3,779,737	+		BT2999	0.30	-1.8
3,779,771	-		BT2999	0.32	+0.7
3,779,776	-		BT2999	0.32	-0.2
3,779,861	-		BT2999	0.35	+0.2
3,779,902	+		BT2999	0.37	-0.6
3,779,904	+		BT2999	0.37	+2.9
3,779,904	+		BT2999	0.37	+0.2
3,779,904	+		BT2999	0.37	+0.2
3,779,904	+		BT2999	0.37	-1.0
3,779,932	+		BT2999	0.38	+4.3
3,779,932	+		BT2999	0.38	-2.7
3,779,932	+		BT2999	0.38	+1.4
3,779,944	+		BT2999	0.38	+1.8
3,779,970	+		BT2999	0.39	+1.8
3,779,982	+		BT2999	0.40	+1.5
3,779,982	+		BT2999	0.40	+0.4
3,780,018	+		BT2999	0.41	-0.2
3,780,040	-		BT2999	0.42	+2.2
3,780,072	+		BT2999	0.43	-0.5
3,780,072	+		BT2999	0.43	+3.0
3,780,138	-		BT2999	0.46	-0.8
3,780,138	-		BT2999	0.46	-2.6
3,780,139	+		BT2999	0.46	-2.1
3,780,140	-		BT2999	0.46	+2.2
3,780,145	-		BT2999	0.46	+1.9
3,780,145	-		BT2999	0.46	-1.2
3,780,168	-		BT2999	0.47	-2.2
3,780,267	-		BT2999	0.51	+1.9
3,780,353	+		BT2999	0.54	-0.9
3,780,354	-		BT2999	0.54	-2.4
3,780,356	+		BT2999	0.54	+2.3
3,780,385	+		BT2999	0.55	-3.3
3,780,385	+		BT2999	0.55	-1.2
3,780,385	+		BT2999	0.55	+0.2
3,780,390	-		BT2999	0.55	+0.8
3,780,403	-		BT2999	0.56	-0.2
3,780,428	+		BT2999	0.57	-0.2
3,780,506	-		BT2999	0.60	+1.2
3,780,507	+		BT2999	0.60	-1.3
3,780,508	-		BT2999	0.60	-1.8
3,780,518	+		BT2999	0.60	-0.8
3,780,518	+		BT2999	0.60	-1.4
3,780,519	-		BT2999	0.60	-0.9
3,780,519	-		BT2999	0.60	+1.8
3,780,530	-		BT2999	0.61	-1.6
3,780,583	+		BT2999	0.63	+1.8
3,780,583	+		BT2999	0.63	-0.2
3,780,584	-		BT2999	0.63	-1.8
3,780,590	+		BT2999	0.63	+4.8
3,780,616	-		BT2999	0.64	+1.2
3,780,616	-		BT2999	0.64	+0.5
3,780,643	+		BT2999	0.65	-3.1
3,780,658	-		BT2999	0.65	-1.3
3,780,658	-		BT2999	0.65	-1.2
3,780,658	-		BT2999	0.65	+1.7
3,780,705	+		BT2999	0.67	+1.4
3,780,712	+		BT2999	0.68	-0.2
3,780,733	+		BT2999	0.68	-1.8
3,780,733	+		BT2999	0.68	+1.5
3,780,735	+		BT2999	0.68	-0.7
3,780,735	+		BT2999	0.68	-0.8
3,780,736	-		BT2999	0.68	+1.2
3,780,756	-		BT2999	0.69	-2.6
3,780,802	+		BT2999	0.71	-0.4
3,780,807	-		BT2999	0.71	+2.2
3,780,811	+		BT2999	0.71	-0.3
3,780,811	+		BT2999	0.71	-0.8
3,780,872	+		BT2999	0.74	+3.2
3,780,873	-		BT2999	0.74	-0.5
3,780,873	-		BT2999	0.74	-0.7
3,780,961	-		BT2999	0.77	-2.6
3,780,973	+		BT2999	0.78	-0.6
3,780,984	-		BT2999	0.78	-1.3
3,780,993	-		BT2999	0.78	-1.5
3,781,004	+		BT2999	0.79	-2.6
3,781,004	+		BT2999	0.79	+2.2
3,781,029	+		BT2999	0.80	-2.6
3,781,030	-		BT2999	0.80	-1.5
3,781,048	-		BT2999	0.80	+1.2
3,781,063	-		BT2999	0.81	+0.7
3,781,082	+		BT2999	0.82	-0.4
3,781,092	+		BT2999	0.82	-2.0
3,781,096	-		BT2999	0.82	-0.8
3,781,099	+		BT2999	0.82	+0.2
3,781,102	+		BT2999	0.82	+3.2
3,781,103	-		BT2999	0.83	-3.7
3,781,103	-		BT2999	0.83	-0.8
3,781,161	+		BT2999	0.85	-1.3
3,781,161	+		BT2999	0.85	-2.4
3,781,175	-		BT2999	0.85	-1.0
3,781,185	-		BT2999	0.86	-1.6
3,781,191	-		BT2999	0.86	-1.4
3,781,194	+		BT2999	0.86	-2.1
3,781,214	-		BT2999	0.87	+2.2
3,781,214	-		BT2999	0.87	-1.1
3,781,232	+		BT2999	0.87	+1.1
3,781,236	+		BT2999	0.88	-2.1
3,781,237	-		BT2999	0.88	+2.1
3,781,237	-		BT2999	0.88	-2.8
3,781,248	-				-1.8
3,781,291	-		BT2999	0.90	+2.2
3,781,330	+				-2.6
3,781,355	-				+2.2
3,781,360	+				-1.7
3,781,360	+				+1.0
3,781,402	-				-2.9
3,781,402	-				-1.1
3,781,469	+				+0.2
3,781,478	+				-1.9
3,781,486	+				+1.9
3,781,491	+				+2.4
3,781,550	+				-1.1
3,781,567	-				+1.8
3,781,599	+				-0.5
3,781,600	-				-1.2
3,781,600	-				+1.2
3,781,617	+				+1.9
3,781,620	+				-1.2
3,781,620	+				-1.7
3,781,621	-				-2.3
3,781,626	-				-0.9
3,781,626	-				+0.0
3,781,626	-				-0.5
3,781,685	-				+0.6
3,781,711	+				-1.6
3,781,711	+				+0.2
3,781,711	+				-2.4
3,781,722	+				-0.6
3,781,722	+				+1.8
3,781,722	+				-1.0
3,781,722	+				+1.0
3,781,722	+				-1.0
3,781,723	-				-1.8
3,781,723	-				-1.4
3,781,724	+				+0.6
3,781,724	+				-1.4
3,781,724	+				+3.3
3,781,724	+				-1.7
3,781,725	-				+2.5
3,781,725	-				-2.7
3,781,726	+				+0.2
3,781,811	+		BT3000	0.12	-1.8
3,781,812	-		BT3000	0.13	+1.0
3,781,812	-		BT3000	0.13	-1.3
3,781,813	+		BT3000	0.13	+1.5
3,781,826	-		BT3000	0.15	-0.8
3,781,835	+		BT3000	0.16	-2.8
3,781,879	-		BT3000	0.23	+2.0
3,781,888	+		BT3000	0.25	+2.3
3,781,889	-		BT3000	0.25	-1.8
3,782,224	+		BT3000	0.78	+0.2
3,782,254	+		BT3000	0.83	-1.3
3,782,254	+		BT3000	0.83	+2.6
3,782,256	+		BT3000	0.83	+0.8
3,782,257	-		BT3000	0.83	-0.5
3,782,257	-		BT3000	0.83	-1.4
3,782,258	+		BT3000	0.83	+0.6
3,782,259	-		BT3000	0.83	-1.9
3,782,309	+				+1.6
3,782,343	+				-2.9
3,782,383	+				+0.2
3,782,384	-				+1.4
3,782,388	+				-1.6
3,782,468	+				+3.5
3,782,469	-				-2.0
3,782,469	-				-1.3
3,782,470	+				-1.2