Experiment: BHIS with Trimethoprim 0.00625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0681 and BT0682 are separated by 23 nucleotides BT0682 and BT0683 are separated by 56 nucleotides BT0683 and BT0684 are separated by 187 nucleotides
BT0681: BT0681 - two-component system sensor histidine kinase (NCBI ptt file), at 845,037 to 846,368
BT0681
BT0682: BT0682 - two-component system response regulator (NCBI ptt file), at 846,392 to 847,129
BT0682
BT0683: BT0683 - alpha-glucosidase (NCBI ptt file), at 847,186 to 849,201
BT0683
BT0684: BT0684 - putative long-chain-fatty-acid--CoA ligase (NCBI ptt file), at 849,389 to 851,053
BT0684
Position (kb) 847
848
849
850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 846.257 kb on - strand at 846.264 kb on - strand at 846.294 kb on + strand at 846.322 kb on - strand at 846.349 kb on - strand at 846.353 kb on + strand at 846.360 kb on + strand at 846.406 kb on + strand at 846.406 kb on + strand at 846.409 kb on - strand at 846.419 kb on + strand at 846.485 kb on + strand, within BT0682 at 846.485 kb on + strand, within BT0682 at 846.486 kb on - strand, within BT0682 at 846.544 kb on + strand, within BT0682 at 846.544 kb on + strand, within BT0682 at 846.545 kb on - strand, within BT0682 at 846.694 kb on - strand, within BT0682 at 846.833 kb on - strand, within BT0682 at 846.907 kb on + strand, within BT0682 at 846.908 kb on - strand, within BT0682 at 846.962 kb on - strand, within BT0682 at 846.962 kb on - strand, within BT0682 at 847.136 kb on - strand at 847.136 kb on - strand at 847.160 kb on - strand at 847.160 kb on - strand at 847.163 kb on - strand at 847.165 kb on - strand at 847.166 kb on + strand at 847.167 kb on - strand at 847.182 kb on + strand at 847.202 kb on + strand at 847.203 kb on - strand at 847.234 kb on + strand at 847.234 kb on + strand at 847.282 kb on - strand at 847.326 kb on + strand at 847.326 kb on + strand at 847.497 kb on + strand, within BT0683 at 847.697 kb on - strand, within BT0683 at 847.704 kb on - strand, within BT0683 at 847.746 kb on + strand, within BT0683 at 847.746 kb on + strand, within BT0683 at 847.747 kb on - strand, within BT0683 at 847.790 kb on + strand, within BT0683 at 847.848 kb on + strand, within BT0683 at 847.887 kb on + strand, within BT0683 at 848.039 kb on + strand, within BT0683 at 848.039 kb on + strand, within BT0683 at 848.262 kb on - strand, within BT0683 at 848.329 kb on + strand, within BT0683 at 848.363 kb on - strand, within BT0683 at 848.434 kb on - strand, within BT0683 at 848.666 kb on - strand, within BT0683 at 848.788 kb on - strand, within BT0683 at 848.804 kb on - strand, within BT0683 at 848.842 kb on + strand, within BT0683 at 848.942 kb on + strand, within BT0683 at 848.947 kb on - strand, within BT0683 at 849.042 kb on + strand at 849.056 kb on - strand at 849.100 kb on + strand at 849.199 kb on + strand at 849.202 kb on + strand at 849.214 kb on - strand at 849.216 kb on + strand at 849.220 kb on + strand at 849.220 kb on + strand at 849.231 kb on - strand at 849.303 kb on + strand at 849.303 kb on + strand at 849.409 kb on - strand at 849.643 kb on - strand, within BT0684 at 849.650 kb on - strand, within BT0684 at 849.667 kb on - strand, within BT0684 at 849.742 kb on - strand, within BT0684 at 849.845 kb on - strand, within BT0684 at 849.995 kb on - strand, within BT0684 at 849.995 kb on - strand, within BT0684 at 850.146 kb on - strand, within BT0684 at 850.167 kb on - strand, within BT0684 at 850.201 kb on + strand, within BT0684
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Trimethoprim 0.00625 mM remove 846,257 - +0.3 846,264 - -0.3 846,294 + -1.3 846,322 - +2.0 846,349 - +3.3 846,353 + -1.2 846,360 + -2.6 846,406 + +0.7 846,406 + -1.1 846,409 - +2.7 846,419 + +0.3 846,485 + BT0682 0.13 +0.6 846,485 + BT0682 0.13 -2.2 846,486 - BT0682 0.13 -1.3 846,544 + BT0682 0.21 +0.7 846,544 + BT0682 0.21 -1.2 846,545 - BT0682 0.21 -2.4 846,694 - BT0682 0.41 -2.4 846,833 - BT0682 0.60 -2.4 846,907 + BT0682 0.70 -2.9 846,908 - BT0682 0.70 -3.1 846,962 - BT0682 0.77 -1.6 846,962 - BT0682 0.77 +3.6 847,136 - -0.8 847,136 - -0.1 847,160 - +0.7 847,160 - -0.3 847,163 - -2.8 847,165 - +1.2 847,166 + +0.3 847,167 - +0.7 847,182 + -0.3 847,202 + +0.7 847,203 - -0.7 847,234 + -2.1 847,234 + +0.4 847,282 - +2.0 847,326 + -0.1 847,326 + -1.3 847,497 + BT0683 0.15 -3.6 847,697 - BT0683 0.25 +0.4 847,704 - BT0683 0.26 +0.3 847,746 + BT0683 0.28 -2.3 847,746 + BT0683 0.28 -3.2 847,747 - BT0683 0.28 -3.3 847,790 + BT0683 0.30 -3.6 847,848 + BT0683 0.33 +1.3 847,887 + BT0683 0.35 -0.3 848,039 + BT0683 0.42 -1.2 848,039 + BT0683 0.42 -2.6 848,262 - BT0683 0.53 -2.4 848,329 + BT0683 0.57 +1.7 848,363 - BT0683 0.58 -2.3 848,434 - BT0683 0.62 +0.1 848,666 - BT0683 0.73 +1.7 848,788 - BT0683 0.79 +1.1 848,804 - BT0683 0.80 -4.0 848,842 + BT0683 0.82 -1.3 848,942 + BT0683 0.87 -4.1 848,947 - BT0683 0.87 -1.3 849,042 + -0.3 849,056 - +2.0 849,100 + -1.3 849,199 + -0.6 849,202 + -0.3 849,214 - +0.9 849,216 + +1.3 849,220 + -0.9 849,220 + -1.7 849,231 - +1.3 849,303 + -0.7 849,303 + -0.9 849,409 - -1.9 849,643 - BT0684 0.15 -3.2 849,650 - BT0684 0.16 +2.5 849,667 - BT0684 0.17 +3.5 849,742 - BT0684 0.21 -1.3 849,845 - BT0684 0.27 -0.6 849,995 - BT0684 0.36 -0.3 849,995 - BT0684 0.36 -1.5 850,146 - BT0684 0.45 -0.6 850,167 - BT0684 0.47 -1.9 850,201 + BT0684 0.49 -1.6
Or see this region's nucleotide sequence