Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0261 and DVU0262 are separated by 3 nucleotides DVU0262 and tmcA are separated by 21 nucleotides tmcA and tmcB are separated by 25 nucleotides tmcB and DVU0265 are separated by 19 nucleotides DVU0265 and DVU0266 are separated by 8 nucleotides
DVU0261: DVU0261 - universal stress protein family (TIGR), at 304,509 to 305,435
DVU0261
DVU0262: DVU0262 - hypothetical protein (TIGR), at 305,439 to 305,993
DVU0262
DVU0263: tmcA - Transmembrane complex, tetraheme cytochrome c3 (Shelley Haveman), at 306,015 to 306,395
tmcA
DVU0264: tmcB - Transmembrane complex, ferredoxin, 2 [4Fe-4S] (Shelley Haveman), at 306,421 to 307,740
tmcB
DVU0265: DVU0265 - membrane protein, putative (TIGR), at 307,760 to 308,419
DVU0265
DVU0266: DVU0266 - hypothetical protein (TIGR), at 308,428 to 309,684
DVU0266
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2 at 305.508 kb on + strand, within DVU0262 at 305.562 kb on - strand, within DVU0262 at 305.618 kb on - strand, within DVU0262 at 305.694 kb on - strand, within DVU0262 at 305.700 kb on - strand, within DVU0262 at 305.742 kb on - strand, within DVU0262 at 305.750 kb on - strand, within DVU0262 at 305.751 kb on - strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.775 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.797 kb on + strand, within DVU0262 at 305.815 kb on - strand, within DVU0262 at 305.859 kb on - strand, within DVU0262 at 305.914 kb on + strand, within DVU0262 at 305.978 kb on + strand at 305.986 kb on - strand at 307.755 kb on - strand at 307.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 305,508 + DVU0262 0.12 +0.9 305,562 - DVU0262 0.22 -1.8 305,618 - DVU0262 0.32 +0.1 305,694 - DVU0262 0.46 -0.3 305,700 - DVU0262 0.47 -0.5 305,742 - DVU0262 0.55 -1.1 305,750 - DVU0262 0.56 +2.1 305,751 - DVU0262 0.56 +0.4 305,775 + DVU0262 0.61 -0.5 305,775 + DVU0262 0.61 -1.3 305,775 + DVU0262 0.61 -0.1 305,775 + DVU0262 0.61 -0.3 305,775 + DVU0262 0.61 +0.3 305,775 + DVU0262 0.61 -0.1 305,775 + DVU0262 0.61 +0.0 305,797 + DVU0262 0.65 -0.3 305,797 + DVU0262 0.65 -1.4 305,815 - DVU0262 0.68 -0.3 305,859 - DVU0262 0.76 -2.1 305,914 + DVU0262 0.86 -0.3 305,978 + -1.6 305,986 - +0.9 307,755 - +1.0 307,757 - -0.7
Or see this region's nucleotide sequence