Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3378

Experiment: Formate/Acetate-Sulfite (10/60-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (10/60-20 mM)
3,549,576	+		DVU3376	0.70	-0.6
3,549,602	-		DVU3376	0.71	-0.6
3,549,610	+		DVU3376	0.72	-0.1
3,549,618	+		DVU3376	0.72	+0.3
3,549,627	-		DVU3376	0.73	-0.9
3,549,629	+		DVU3376	0.73	-1.6
3,549,690	+		DVU3376	0.77	-0.9
3,549,695	+		DVU3376	0.77	+0.0
3,549,695	+		DVU3376	0.77	-0.1
3,549,695	+		DVU3376	0.77	-1.4
3,549,695	+		DVU3376	0.77	+0.3
3,549,698	-		DVU3376	0.77	-0.2
3,549,698	-		DVU3376	0.77	-0.1
3,549,703	-		DVU3376	0.78	-1.1
3,549,703	-		DVU3376	0.78	-0.9
3,549,703	-		DVU3376	0.78	+0.0
3,549,731	-		DVU3376	0.80	+0.0
3,549,746	+		DVU3376	0.81	+0.3
3,549,798	+		DVU3376	0.84	-0.3
3,549,816	+		DVU3376	0.85	+1.1
3,549,816	+		DVU3376	0.85	-0.3
3,549,826	+		DVU3376	0.86	-0.4
3,549,832	-		DVU3376	0.86	+0.4
3,549,970	+				-0.1
3,549,978	-				+0.4
3,549,993	-				-0.1
3,550,033	-				+0.0
3,550,069	-				-0.2
3,550,074	-				+0.3
3,550,082	+				-0.7
3,550,092	+				+0.1
3,550,098	-	dgkA	DVU3377	0.11	-1.1
3,550,130	+	dgkA	DVU3377	0.19	+0.1
3,550,131	+	dgkA	DVU3377	0.19	-1.4
3,550,131	+	dgkA	DVU3377	0.19	-0.3
3,550,131	+	dgkA	DVU3377	0.19	-0.2
3,550,132	+	dgkA	DVU3377	0.20	+0.5
3,550,139	-	dgkA	DVU3377	0.22	-0.1
3,550,139	-	dgkA	DVU3377	0.22	-0.5
3,550,139	-	dgkA	DVU3377	0.22	+0.3
3,550,194	+	dgkA	DVU3377	0.36	+0.1
3,550,195	-	dgkA	DVU3377	0.37	+0.1
3,550,244	-	dgkA	DVU3377	0.50	-0.5
3,550,281	-	dgkA	DVU3377	0.59	+0.4
3,550,344	+	dgkA	DVU3377	0.76	-0.5
3,550,357	-	dgkA	DVU3377	0.80	+1.2
3,550,462	+				-0.6
3,550,465	-				-0.1
3,550,465	-				+0.3
3,550,465	-				-0.2
3,550,475	-				-0.9
3,550,477	+				+0.7
3,550,511	+				-0.2
3,550,532	+				+0.6
3,550,532	+				-0.4
3,550,532	+				-0.1
3,550,532	+				-2.0
3,550,532	+				-0.2
3,550,534	+				-0.5
3,550,540	-				-0.2
3,550,540	-				-0.5
3,550,549	+				-0.1
3,550,633	+		DVU3378	0.21	-0.5
3,550,654	+		DVU3378	0.26	-1.1
3,550,654	+		DVU3378	0.26	-1.4
3,550,673	-		DVU3378	0.30	+0.0
3,550,688	-		DVU3378	0.33	-0.5
3,550,698	+		DVU3378	0.35	-0.1
3,550,779	+		DVU3378	0.53	-0.8
3,550,850	-		DVU3378	0.68	-1.0
3,550,859	+		DVU3378	0.70	-1.5
3,550,859	+		DVU3378	0.70	+1.0
3,550,936	-		DVU3378	0.87	-0.4
3,550,944	-		DVU3378	0.89	+0.1
3,550,974	+				-0.1
3,551,049	-				+0.2
3,551,062	+				+0.3
3,551,062	+				+1.4
3,551,087	-				-0.5
3,551,087	-				+0.1
3,551,159	+				-0.5
3,551,252	+				-1.3
3,551,252	+				-0.3
3,551,314	+				+0.1
3,551,314	+				-0.6
3,551,314	+				-0.2
3,551,314	+				-0.3
3,551,355	+				-0.3
3,551,363	+				-0.8
3,551,363	-				-0.5
3,551,363	-				-0.2
3,551,410	+				+0.8
3,551,411	-				-0.3
3,551,411	-				+0.8
3,551,411	-				-1.0
3,551,459	+				-1.3
3,551,459	+				-1.2
3,551,487	-				-0.0
3,551,505	+				-0.5
3,551,513	-				+0.4
3,551,556	-				+0.3
3,551,593	+				-0.2
3,551,630	+				+0.8
3,551,657	-				-0.0
3,551,697	+				-0.3
3,551,705	-				-0.4
3,551,705	-				+0.3
3,551,728	-		DVU3379	0.11	-0.3
3,551,873	-		DVU3379	0.17	-0.3
3,551,884	+		DVU3379	0.17	+0.6
3,551,888	-		DVU3379	0.18	-0.9
3,551,931	+		DVU3379	0.19	-0.6
3,551,938	-		DVU3379	0.20	+0.4
3,551,944	-		DVU3379	0.20	-0.9