Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0891 and aroK-1 are separated by 123 nucleotides aroK-1 and DVU0893 are separated by 28 nucleotides DVU0893 and aroC are separated by 190 nucleotides
DVU0891: DVU0891 - aminotransferase, classes I and II (TIGR), at 982,410 to 983,603
DVU0891
DVU0892: aroK-1 - shikimate kinase (TIGR), at 983,727 to 984,254
aroK-1
DVU0893: DVU0893 - universal stress protein family (TIGR), at 984,283 to 984,765
DVU0893
DVU0894: aroC - chorismate synthase (TIGR), at 984,956 to 986,020
aroC
Position (kb) 984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 983.389 kb on - strand, within DVU0891 at 983.513 kb on - strand at 983.629 kb on + strand at 983.655 kb on - strand at 983.661 kb on + strand at 983.713 kb on + strand at 983.726 kb on - strand at 983.953 kb on - strand, within aroK-1 at 984.079 kb on + strand, within aroK-1 at 984.189 kb on - strand, within aroK-1 at 984.227 kb on - strand at 984.259 kb on + strand at 984.281 kb on - strand at 984.356 kb on + strand, within DVU0893 at 984.377 kb on + strand, within DVU0893 at 984.385 kb on - strand, within DVU0893 at 984.451 kb on + strand, within DVU0893 at 984.515 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.683 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.700 kb on + strand, within DVU0893 at 984.813 kb on - strand at 984.813 kb on - strand at 984.870 kb on + strand at 984.880 kb on + strand at 984.880 kb on + strand at 984.886 kb on + strand at 984.888 kb on - strand at 984.906 kb on + strand at 985.253 kb on + strand, within aroC at 985.704 kb on - strand, within aroC
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 983,389 - DVU0891 0.82 -0.3 983,513 - -1.5 983,629 + -0.2 983,655 - -2.5 983,661 + +1.0 983,713 + -0.3 983,726 - -0.1 983,953 - aroK-1 DVU0892 0.43 +3.4 984,079 + aroK-1 DVU0892 0.67 -0.6 984,189 - aroK-1 DVU0892 0.88 -0.6 984,227 - -1.1 984,259 + -1.4 984,281 - +0.3 984,356 + DVU0893 0.15 -1.3 984,377 + DVU0893 0.19 -1.5 984,385 - DVU0893 0.21 -0.7 984,451 + DVU0893 0.35 -0.3 984,515 + DVU0893 0.48 -1.3 984,529 + DVU0893 0.51 -0.2 984,529 + DVU0893 0.51 -1.1 984,683 + DVU0893 0.83 -0.0 984,700 + DVU0893 0.86 +1.3 984,700 + DVU0893 0.86 +0.2 984,700 + DVU0893 0.86 -1.2 984,813 - -1.2 984,813 - -0.2 984,870 + +0.1 984,880 + -0.0 984,880 + -0.0 984,886 + -0.6 984,888 - -0.2 984,906 + -0.5 985,253 + aroC DVU0894 0.28 +0.2 985,704 - aroC DVU0894 0.70 +1.4
Or see this region's nucleotide sequence