Experiment: Formate/Acetate-Sulfite (10/60-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2029 and DVU2030 overlap by 4 nucleotides DVU2030 and DORF15105 overlap by 38 nucleotides DORF15105 and DVU2032 are separated by 480 nucleotides
DVU2029: DVU2029 - ISDvu2, transposase OrfA (TIGR), at 2,111,440 to 2,111,838
DVU2029
DVU2030: DVU2030 - ISDvu2, transposase OrfB (TIGR), at 2,111,835 to 2,112,677
DVU2030
DORF15105: DORF15105 - no description, at 2,112,640 to 2,113,482
DORF15105
DVU2032: DVU2032 - ERF family protein (TIGR), at 2,113,963 to 2,114,676
DVU2032
Position (kb)
2112
2113
2114 Strain fitness (log2 ratio)
-1
0
1 at 2112.848 kb on - strand, within DORF15105 at 2112.898 kb on - strand, within DORF15105 at 2113.049 kb on - strand, within DORF15105 at 2113.142 kb on - strand, within DORF15105 at 2113.339 kb on - strand, within DORF15105 at 2113.471 kb on - strand at 2113.591 kb on + strand at 2113.605 kb on + strand at 2113.709 kb on - strand at 2113.711 kb on + strand at 2113.719 kb on - strand at 2113.781 kb on + strand at 2113.781 kb on + strand at 2113.789 kb on - strand at 2113.789 kb on - strand at 2113.801 kb on + strand at 2113.970 kb on + strand at 2113.980 kb on - strand at 2113.980 kb on - strand at 2113.985 kb on + strand at 2113.985 kb on + strand at 2113.993 kb on - strand at 2113.993 kb on - strand at 2114.055 kb on - strand, within DVU2032 at 2114.130 kb on + strand, within DVU2032 at 2114.150 kb on + strand, within DVU2032 at 2114.216 kb on - strand, within DVU2032 at 2114.249 kb on - strand, within DVU2032 at 2114.258 kb on + strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.261 kb on - strand, within DVU2032 at 2114.298 kb on - strand, within DVU2032 at 2114.340 kb on + strand, within DVU2032 at 2114.403 kb on + strand, within DVU2032 at 2114.472 kb on - strand, within DVU2032
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (10/60-20 mM) remove 2,112,848 - DORF15105 0.25 -0.8 2,112,898 - DORF15105 0.31 +0.2 2,113,049 - DORF15105 0.49 +0.0 2,113,142 - DORF15105 0.60 -0.8 2,113,339 - DORF15105 0.83 -0.6 2,113,471 - -0.0 2,113,591 + -0.0 2,113,605 + -0.9 2,113,709 - -0.6 2,113,711 + +0.0 2,113,719 - -0.6 2,113,781 + -1.1 2,113,781 + +0.1 2,113,789 - -0.5 2,113,789 - -1.5 2,113,801 + -0.7 2,113,970 + -0.9 2,113,980 - -0.5 2,113,980 - -1.6 2,113,985 + -1.0 2,113,985 + +0.8 2,113,993 - +0.2 2,113,993 - +0.9 2,114,055 - DVU2032 0.13 -0.2 2,114,130 + DVU2032 0.23 +0.1 2,114,150 + DVU2032 0.26 -0.1 2,114,216 - DVU2032 0.35 +1.4 2,114,249 - DVU2032 0.40 -0.1 2,114,258 + DVU2032 0.41 +1.5 2,114,261 - DVU2032 0.42 -1.0 2,114,261 - DVU2032 0.42 -0.3 2,114,261 - DVU2032 0.42 +0.3 2,114,261 - DVU2032 0.42 -0.0 2,114,261 - DVU2032 0.42 -0.3 2,114,261 - DVU2032 0.42 -1.0 2,114,298 - DVU2032 0.47 -0.2 2,114,340 + DVU2032 0.53 -1.2 2,114,403 + DVU2032 0.62 -0.2 2,114,472 - DVU2032 0.71 +1.2
Or see this region's nucleotide sequence