Experiment: Xylemvessel barcodes T0L2P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.874.1 and Xcc-8004.875.1 are separated by 301 nucleotides Xcc-8004.875.1 and Xcc-8004.876.1 overlap by 53 nucleotides Xcc-8004.876.1 and Xcc-8004.877.1 are separated by 387 nucleotides
Xcc-8004.874.1: Xcc-8004.874.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 822,281 to 824,665
Xcc-8004.874.1
Xcc-8004.875.1: Xcc-8004.875.1 - Mobile element protein, at 824,967 to 825,437
Xcc-8004.875.1
Xcc-8004.876.1: Xcc-8004.876.1 - Mobile element protein, at 825,385 to 825,771
Xcc-8004.876.1
Xcc-8004.877.1: Xcc-8004.877.1 - hypothetical protein, at 826,159 to 828,201
Xcc-8004.877.1
Position (kb) 824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 824.076 kb on - strand, within Xcc-8004.874.1 at 824.102 kb on + strand, within Xcc-8004.874.1 at 824.168 kb on + strand, within Xcc-8004.874.1 at 824.322 kb on + strand, within Xcc-8004.874.1 at 824.407 kb on + strand, within Xcc-8004.874.1 at 824.517 kb on - strand at 824.525 kb on + strand at 824.525 kb on + strand at 824.525 kb on + strand at 824.636 kb on + strand at 824.696 kb on - strand at 824.953 kb on - strand at 824.957 kb on - strand at 824.957 kb on - strand at 824.957 kb on - strand at 825.421 kb on - strand at 825.633 kb on - strand, within Xcc-8004.876.1 at 825.633 kb on - strand, within Xcc-8004.876.1 at 826.067 kb on + strand at 826.067 kb on + strand at 826.085 kb on + strand at 826.086 kb on - strand at 826.203 kb on + strand at 826.204 kb on - strand at 826.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4 remove 824,076 - Xcc-8004.874.1 0.75 -1.1 824,102 + Xcc-8004.874.1 0.76 -0.3 824,168 + Xcc-8004.874.1 0.79 +0.3 824,322 + Xcc-8004.874.1 0.86 -1.4 824,407 + Xcc-8004.874.1 0.89 -1.0 824,517 - +0.5 824,525 + -2.0 824,525 + +1.9 824,525 + -2.2 824,636 + +0.4 824,696 - +0.9 824,953 - +0.3 824,957 - -0.1 824,957 - -1.3 824,957 - -0.2 825,421 - -1.8 825,633 - Xcc-8004.876.1 0.64 -0.7 825,633 - Xcc-8004.876.1 0.64 -1.1 826,067 + +0.0 826,067 + -2.8 826,085 + +0.5 826,086 - +0.4 826,203 + +0.9 826,204 - +0.2 826,204 - -0.5
Or see this region's nucleotide sequence