Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5105.1

Experiment: Xylemvessel barcodes T0L2P4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes T0L2P4
4,839,609	-				+0.1
4,839,609	-				-0.4
4,839,675	+				-1.4
4,839,675	+				+1.8
4,839,675	+				-0.1
4,839,675	+				-1.8
4,839,675	+				-1.8
4,839,676	-				-2.1
4,839,676	-				+0.0
4,839,676	-				-0.8
4,839,676	-				+2.0
4,839,727	+				+0.4
4,839,727	+				-0.5
4,839,727	+				-2.4
4,839,727	+				-1.9
4,839,727	+				+0.4
4,839,728	-				+0.4
4,839,728	-				+0.7
4,839,728	-				+0.2
4,839,763	-				-0.8
4,839,769	+				+2.6
4,839,769	+				+0.3
4,839,769	+				+1.3
4,839,769	+				+0.7
4,839,770	-				-1.1
4,839,770	-				+1.1
4,839,795	+				-0.5
4,839,795	+				-0.3
4,839,795	+				-0.0
4,839,795	+				-0.6
4,839,795	+				+1.0
4,839,795	+				+1.2
4,839,795	+				-0.7
4,839,795	+				-1.9
4,839,796	-				-0.5
4,839,796	-				-1.7
4,839,796	-				-1.2
4,839,796	-				-0.8
4,839,796	-				+0.3
4,839,796	-				-2.5
4,839,796	-				-2.0
4,839,808	+				+0.5
4,839,808	+				+0.0
4,839,808	+				-0.3
4,839,808	+				+1.0
4,839,808	+				+1.1
4,839,808	+				+1.3
4,839,808	+				+1.0
4,839,808	+				+3.6
4,839,808	+				+5.1
4,839,808	+				+0.1
4,839,808	+				+0.0
4,839,808	+				+0.2
4,839,808	+				-2.1
4,839,808	+				+0.5
4,839,808	+				-0.6
4,839,809	-				+0.6
4,839,809	-				+1.3
4,839,809	-				+0.2
4,839,809	-				+1.1
4,839,809	-				-1.8
4,839,809	-				+0.1
4,839,809	-				+0.1
4,839,809	-				-0.8
4,839,809	-				+1.4
4,839,809	-				+1.9
4,839,809	-				+1.3
4,839,809	-				-0.8
4,839,809	-				+1.5
4,839,809	-				+0.2
4,839,809	-				+2.6
4,839,809	-				-2.0
4,839,809	-				-1.6
4,839,809	-				-0.1
4,839,809	-				-0.3
4,839,809	-				-0.9
4,839,809	-				-0.2
4,839,809	-				-0.4
4,839,809	-				+0.6
4,839,809	-				-0.1
4,839,809	-				+1.0
4,839,809	-				+2.2
4,839,809	-				-1.6
4,839,809	-				-2.2
4,839,809	-				-1.3
4,839,809	-				-1.8
4,839,809	-				-0.3
4,839,838	+				+1.3
4,839,838	+				-3.2
4,839,839	-				-0.7
4,839,968	+				+0.6
4,839,968	+				+1.0
4,839,968	+				-0.8
4,839,968	+				-3.3
4,839,968	+				-0.6
4,839,969	-				+0.1
4,839,970	+				+0.4
4,839,970	+				+0.2
4,839,970	+				+0.9
4,839,970	+				+1.1
4,839,970	+				+1.1
4,839,970	+				-2.6
4,839,970	+				-0.8
4,839,970	+				-0.1
4,839,971	-				-1.5
4,839,971	-				+3.3
4,839,971	-				-2.1
4,839,971	-				-1.6
4,839,971	-				-1.7
4,839,971	-				-0.3
4,839,971	-				+0.1
4,839,971	-				-0.6
4,839,971	-				-1.2
4,839,971	-				-0.3
4,839,971	-				-0.2
4,839,971	-				-0.8
4,839,971	-				-0.3
4,839,971	-				-1.8
4,839,971	-				+0.2
4,839,971	-				+1.3
4,839,971	-				+1.8
4,839,971	-				-0.3
4,839,971	-				-1.4
4,839,971	-				+0.6
4,839,983	+				-1.4
4,839,984	-				-0.7
4,839,984	-				+2.3
4,840,021	+				-1.0
4,840,028	+				-0.8
4,840,035	+				+0.5
4,840,069	+				+1.1
4,840,070	-				-0.5
4,840,083	+				-1.0
4,840,092	+				+1.6
4,840,092	+				-1.0
4,840,092	+				-1.0
4,840,092	+				+1.1
4,840,093	-				+0.9
4,840,093	-				+0.9
4,840,093	-				-1.4
4,840,093	-				+1.2
4,840,134	-				-1.4
4,842,098	-		Xcc-8004.5105.1	0.71	+0.3
4,842,695	-				-0.3
4,842,886	-				-1.0
4,842,907	+				+1.7
4,842,907	+				-1.0
4,842,908	-				+0.9
4,842,908	-				+0.0
4,842,943	-				+0.3
4,843,109	+		Xcc-8004.5106.1	0.48	-0.8
4,843,166	+		Xcc-8004.5106.1	0.68	-0.7
4,843,166	+		Xcc-8004.5106.1	0.68	-2.5
4,843,166	+		Xcc-8004.5106.1	0.68	+1.2
4,843,166	+		Xcc-8004.5106.1	0.68	-0.3
4,843,166	+		Xcc-8004.5106.1	0.68	+0.6
4,843,166	+		Xcc-8004.5106.1	0.68	-1.3
4,843,167	-		Xcc-8004.5106.1	0.68	+0.1
4,843,167	-		Xcc-8004.5106.1	0.68	+0.7
4,843,167	-		Xcc-8004.5106.1	0.68	-0.6
4,843,167	-		Xcc-8004.5106.1	0.68	-1.8
4,843,175	+		Xcc-8004.5106.1	0.71	+1.7
4,843,175	+		Xcc-8004.5106.1	0.71	-0.5
4,843,176	-		Xcc-8004.5106.1	0.72	-2.9
4,843,199	-		Xcc-8004.5106.1	0.80	+1.2
4,843,199	-		Xcc-8004.5106.1	0.80	+0.0
4,843,199	-		Xcc-8004.5106.1	0.80	+1.0
4,843,232	+				-1.4
4,843,232	+				-1.0
4,843,232	+				-0.3
4,843,233	-				-0.4
4,843,233	-				-1.5
4,843,233	-				-0.8
4,843,233	-				+1.2
4,843,233	-				+1.4
4,843,233	-				+0.7
4,843,233	-				-1.0
4,843,244	+				-2.2
4,843,244	+				+1.3
4,843,244	+				-1.4
4,843,244	+				+0.6
4,843,244	+				+1.1
4,843,244	+				+1.1
4,843,244	+				-2.3
4,843,244	+				-0.7
4,843,244	+				+0.6
4,843,244	+				-2.3
4,843,244	+				-0.4
4,843,244	+				-0.7
4,843,244	+				+0.4
4,843,244	+				-1.8
4,843,244	+				+0.3
4,843,244	+				-0.3
4,843,244	+				-0.8
4,843,244	+				-0.8
4,843,244	+				+0.0
4,843,244	+				+1.1
4,843,244	+				-0.6
4,843,244	+				+0.1
4,843,244	+				+0.9
4,843,244	+				-1.3
4,843,245	-				-1.4
4,843,245	-				+0.2
4,843,245	-				+1.4
4,843,245	-				-1.3
4,843,245	-				-1.6
4,843,245	-				-1.1
4,843,245	-				-2.3
4,843,245	-				+1.3
4,843,245	-				-0.3
4,843,245	-				-1.0
4,843,245	-				+0.2
4,843,245	-				+0.4
4,843,245	-				+1.7
4,843,245	-				-0.5
4,843,245	-				+0.7
4,843,246	+				-0.8
4,843,246	+				-1.1
4,843,246	+				-0.6
4,843,246	+				-0.0
4,843,246	+				+2.8
4,843,246	+				+1.4
4,843,247	-				+3.0
4,843,247	-				-1.5
4,843,247	-				-1.1
4,843,247	-				-1.0
4,843,247	-				+1.9
4,843,247	-				-1.0
4,843,296	+				-1.3
4,843,366	+				-2.0
4,843,366	+				+1.1
4,843,366	+				+1.7
4,843,366	+				-2.4
4,843,367	-				+1.6
4,843,367	-				+0.3
4,843,367	-				-0.8
4,843,367	-				-0.4
4,843,367	-				+1.6
4,843,367	-				+0.3
4,843,367	-				-0.5
4,843,507	+				-2.9
4,843,675	+		Xcc-8004.5108.1	0.11	-1.2
4,843,675	+		Xcc-8004.5108.1	0.11	+1.3
4,843,676	-		Xcc-8004.5108.1	0.11	-2.1
4,843,676	-		Xcc-8004.5108.1	0.11	-0.9
4,843,678	+		Xcc-8004.5108.1	0.11	-1.4
4,843,678	+		Xcc-8004.5108.1	0.11	-1.4
4,843,678	+		Xcc-8004.5108.1	0.11	+0.5
4,843,678	+		Xcc-8004.5108.1	0.11	-0.1
4,843,679	-		Xcc-8004.5108.1	0.12	-0.3