Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4768.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4766.1 and Xcc-8004.4767.1 are separated by 39 nucleotidesXcc-8004.4767.1 and Xcc-8004.4768.1 overlap by 37 nucleotidesXcc-8004.4768.1 and Xcc-8004.4769.1 are separated by 119 nucleotides Xcc-8004.4766.1: Xcc-8004.4766.1 - Helicase PriA essential for oriC/DnaA-independent DNA replication, at 4,536,747 to 4,537,004 Xcc-8004.4766.1 Xcc-8004.4767.1: Xcc-8004.4767.1 - FIG01209685: hypothetical protein, at 4,537,044 to 4,537,877 Xcc-8004.4767.1 Xcc-8004.4768.1: Xcc-8004.4768.1 - FIG01210642: hypothetical protein, at 4,537,841 to 4,538,380 Xcc-8004.4768.1 Xcc-8004.4769.1: Xcc-8004.4769.1 - NADH dehydrogenase (EC 1.6.99.3), at 4,538,500 to 4,539,786 Xcc-8004.4769.1 Position (kb) 4537 4538 4539Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4537.252 kb on + strand, within Xcc-8004.4767.1at 4537.252 kb on + strand, within Xcc-8004.4767.1at 4537.252 kb on + strand, within Xcc-8004.4767.1at 4537.253 kb on - strand, within Xcc-8004.4767.1at 4537.253 kb on - strand, within Xcc-8004.4767.1at 4537.253 kb on - strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.456 kb on + strand, within Xcc-8004.4767.1at 4537.457 kb on - strand, within Xcc-8004.4767.1at 4537.457 kb on - strand, within Xcc-8004.4767.1at 4537.457 kb on - strand, within Xcc-8004.4767.1at 4537.516 kb on + strand, within Xcc-8004.4767.1at 4537.610 kb on - strand, within Xcc-8004.4767.1at 4537.670 kb on - strand, within Xcc-8004.4767.1at 4537.753 kb on + strand, within Xcc-8004.4767.1at 4537.753 kb on + strand, within Xcc-8004.4767.1at 4538.029 kb on + strand, within Xcc-8004.4768.1at 4538.029 kb on + strand, within Xcc-8004.4768.1at 4538.030 kb on - strand, within Xcc-8004.4768.1at 4538.104 kb on + strand, within Xcc-8004.4768.1at 4538.105 kb on - strand, within Xcc-8004.4768.1at 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.380 kb on + strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.381 kb on - strandat 4538.564 kb on + strandat 4538.564 kb on + strandat 4538.565 kb on - strandat 4538.650 kb on + strand, within Xcc-8004.4769.1at 4538.650 kb on + strand, within Xcc-8004.4769.1at 4538.650 kb on + strand, within Xcc-8004.4769.1at 4538.651 kb on - strand, within Xcc-8004.4769.1at 4538.651 kb on - strand, within Xcc-8004.4769.1at 4538.809 kb on + strand, within Xcc-8004.4769.1at 4538.809 kb on + strand, within Xcc-8004.4769.1at 4538.809 kb on + strand, within Xcc-8004.4769.1at 4538.809 kb on + strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.810 kb on - strand, within Xcc-8004.4769.1at 4538.848 kb on + strand, within Xcc-8004.4769.1at 4538.915 kb on + strand, within Xcc-8004.4769.1at 4538.915 kb on + strand, within Xcc-8004.4769.1at 4538.916 kb on - strand, within Xcc-8004.4769.1at 4538.916 kb on - strand, within Xcc-8004.4769.1at 4538.916 kb on - strand, within Xcc-8004.4769.1at 4538.916 kb on - strand, within Xcc-8004.4769.1at 4538.916 kb on - strand, within Xcc-8004.4769.1at 4539.166 kb on - strand, within Xcc-8004.4769.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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4,537,252 + Xcc-8004.4767.1 0.25 -1.4
4,537,252 + Xcc-8004.4767.1 0.25 -1.0
4,537,252 + Xcc-8004.4767.1 0.25 -0.8
4,537,253 - Xcc-8004.4767.1 0.25 -0.3
4,537,253 - Xcc-8004.4767.1 0.25 -1.9
4,537,253 - Xcc-8004.4767.1 0.25 +1.5
4,537,456 + Xcc-8004.4767.1 0.49 -0.6
4,537,456 + Xcc-8004.4767.1 0.49 +0.3
4,537,456 + Xcc-8004.4767.1 0.49 +2.4
4,537,456 + Xcc-8004.4767.1 0.49 +1.2
4,537,456 + Xcc-8004.4767.1 0.49 -1.5
4,537,456 + Xcc-8004.4767.1 0.49 -0.3
4,537,457 - Xcc-8004.4767.1 0.50 +0.1
4,537,457 - Xcc-8004.4767.1 0.50 +1.3
4,537,457 - Xcc-8004.4767.1 0.50 -2.5
4,537,516 + Xcc-8004.4767.1 0.57 -1.4
4,537,610 - Xcc-8004.4767.1 0.68 +0.6
4,537,670 - Xcc-8004.4767.1 0.75 -2.6
4,537,753 + Xcc-8004.4767.1 0.85 -0.4
4,537,753 + Xcc-8004.4767.1 0.85 -0.3
4,538,029 + Xcc-8004.4768.1 0.35 -0.6
4,538,029 + Xcc-8004.4768.1 0.35 -0.6
4,538,030 - Xcc-8004.4768.1 0.35 -1.0
4,538,104 + Xcc-8004.4768.1 0.49 -0.9
4,538,105 - Xcc-8004.4768.1 0.49 -1.8
4,538,380 + +1.3
4,538,380 + -0.4
4,538,380 + +3.1
4,538,380 + -2.7
4,538,380 + +0.4
4,538,380 + +1.6
4,538,380 + -1.1
4,538,380 + -1.8
4,538,380 + -0.6
4,538,381 - -2.1
4,538,381 - +0.2
4,538,381 - +0.6
4,538,381 - -1.4
4,538,381 - -1.4
4,538,381 - +1.2
4,538,381 - +1.6
4,538,564 + -0.2
4,538,564 + -1.9
4,538,565 - -1.2
4,538,650 + Xcc-8004.4769.1 0.12 +2.4
4,538,650 + Xcc-8004.4769.1 0.12 -1.3
4,538,650 + Xcc-8004.4769.1 0.12 +1.5
4,538,651 - Xcc-8004.4769.1 0.12 +2.4
4,538,651 - Xcc-8004.4769.1 0.12 +0.6
4,538,809 + Xcc-8004.4769.1 0.24 -0.4
4,538,809 + Xcc-8004.4769.1 0.24 +1.2
4,538,809 + Xcc-8004.4769.1 0.24 +0.2
4,538,809 + Xcc-8004.4769.1 0.24 +0.2
4,538,810 - Xcc-8004.4769.1 0.24 -1.2
4,538,810 - Xcc-8004.4769.1 0.24 -2.5
4,538,810 - Xcc-8004.4769.1 0.24 -1.9
4,538,810 - Xcc-8004.4769.1 0.24 -0.6
4,538,810 - Xcc-8004.4769.1 0.24 -1.2
4,538,810 - Xcc-8004.4769.1 0.24 +0.0
4,538,810 - Xcc-8004.4769.1 0.24 +0.9
4,538,810 - Xcc-8004.4769.1 0.24 +0.2
4,538,810 - Xcc-8004.4769.1 0.24 -1.9
4,538,848 + Xcc-8004.4769.1 0.27 -2.2
4,538,915 + Xcc-8004.4769.1 0.32 +1.2
4,538,915 + Xcc-8004.4769.1 0.32 -0.2
4,538,916 - Xcc-8004.4769.1 0.32 +0.8
4,538,916 - Xcc-8004.4769.1 0.32 +0.2
4,538,916 - Xcc-8004.4769.1 0.32 -2.1
4,538,916 - Xcc-8004.4769.1 0.32 -0.8
4,538,916 - Xcc-8004.4769.1 0.32 +0.0
4,539,166 - Xcc-8004.4769.1 0.52 -2.1

Or see this region's nucleotide sequence