Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4277.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotidesXcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotidesXcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotidesXcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotides Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221 Xcc-8004.4275.1 Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761 Xcc-8004.4276.1 Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628 Xcc-8004.4277.1 Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515 Xcc-8004.4278.1 Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061 Xcc-8004.4279.1 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4093.798 kb on + strandat 4095.509 kb on - strandat 4095.509 kb on - strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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4,093,798 + -1.0
4,095,509 - +2.3
4,095,509 - +0.2
4,095,560 + -2.0
4,095,560 + -0.3
4,095,560 + +1.5
4,095,560 + +1.0
4,095,560 + -0.9
4,095,561 - -0.2
4,095,561 - -3.1
4,095,561 - +1.0
4,095,561 - +0.4
4,095,561 - -0.1
4,095,561 - +1.2
4,095,561 - -0.4
4,095,561 - +0.1
4,095,561 - +0.3

Or see this region's nucleotide sequence