Experiment: Xylemvessel barcodes T0L2P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3170.1 and Xcc-8004.3171.1 are separated by 10 nucleotides Xcc-8004.3171.1 and Xcc-8004.3172.1 are separated by 1 nucleotides Xcc-8004.3172.1 and Xcc-8004.3173.1 overlap by 4 nucleotides
Xcc-8004.3170.1: Xcc-8004.3170.1 - FIG01210267: hypothetical protein, at 3,090,553 to 3,091,434
Xcc-8004.3170.1
Xcc-8004.3171.1: Xcc-8004.3171.1 - FIG01213081: hypothetical protein, at 3,091,445 to 3,092,581
Xcc-8004.3171.1
Xcc-8004.3172.1: Xcc-8004.3172.1 - glycosyl transferase, at 3,092,583 to 3,093,521
Xcc-8004.3172.1
Xcc-8004.3173.1: Xcc-8004.3173.1 - lipopolysaccharide biosynthesis protein, at 3,093,518 to 3,094,771
Xcc-8004.3173.1
Position (kb) 3091
3092
3093 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3090.622 kb on + strand at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.729 kb on - strand, within Xcc-8004.3170.1 at 3090.734 kb on + strand, within Xcc-8004.3170.1 at 3090.735 kb on - strand, within Xcc-8004.3170.1 at 3091.385 kb on + strand at 3091.385 kb on + strand at 3091.582 kb on - strand, within Xcc-8004.3171.1 at 3091.662 kb on + strand, within Xcc-8004.3171.1 at 3091.663 kb on - strand, within Xcc-8004.3171.1 at 3091.834 kb on - strand, within Xcc-8004.3171.1 at 3091.881 kb on + strand, within Xcc-8004.3171.1 at 3092.129 kb on + strand, within Xcc-8004.3171.1 at 3092.130 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.499 kb on + strand at 3092.499 kb on + strand at 3092.499 kb on + strand at 3092.500 kb on - strand at 3092.508 kb on + strand at 3092.508 kb on + strand at 3092.544 kb on - strand at 3092.544 kb on - strand at 3092.584 kb on + strand at 3092.585 kb on - strand at 3092.638 kb on + strand at 3092.796 kb on + strand, within Xcc-8004.3172.1 at 3092.797 kb on - strand, within Xcc-8004.3172.1 at 3092.905 kb on + strand, within Xcc-8004.3172.1 at 3092.963 kb on + strand, within Xcc-8004.3172.1 at 3092.963 kb on + strand, within Xcc-8004.3172.1 at 3092.964 kb on - strand, within Xcc-8004.3172.1 at 3093.005 kb on + strand, within Xcc-8004.3172.1 at 3093.005 kb on + strand, within Xcc-8004.3172.1 at 3093.043 kb on + strand, within Xcc-8004.3172.1 at 3093.144 kb on - strand, within Xcc-8004.3172.1 at 3093.144 kb on - strand, within Xcc-8004.3172.1 at 3093.156 kb on + strand, within Xcc-8004.3172.1 at 3093.157 kb on - strand, within Xcc-8004.3172.1 at 3093.164 kb on - strand, within Xcc-8004.3172.1 at 3093.199 kb on + strand, within Xcc-8004.3172.1 at 3093.570 kb on + strand at 3093.579 kb on + strand at 3093.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4 remove 3,090,622 + +0.7 3,090,701 + Xcc-8004.3170.1 0.17 +0.6 3,090,701 + Xcc-8004.3170.1 0.17 -0.6 3,090,701 + Xcc-8004.3170.1 0.17 +0.1 3,090,701 + Xcc-8004.3170.1 0.17 +0.5 3,090,701 + Xcc-8004.3170.1 0.17 -1.3 3,090,701 + Xcc-8004.3170.1 0.17 +1.0 3,090,701 + Xcc-8004.3170.1 0.17 -1.2 3,090,702 - Xcc-8004.3170.1 0.17 -0.4 3,090,702 - Xcc-8004.3170.1 0.17 +1.4 3,090,702 - Xcc-8004.3170.1 0.17 +0.3 3,090,702 - Xcc-8004.3170.1 0.17 +1.3 3,090,729 - Xcc-8004.3170.1 0.20 -0.5 3,090,734 + Xcc-8004.3170.1 0.21 -0.3 3,090,735 - Xcc-8004.3170.1 0.21 -0.7 3,091,385 + -1.4 3,091,385 + -0.8 3,091,582 - Xcc-8004.3171.1 0.12 -0.7 3,091,662 + Xcc-8004.3171.1 0.19 -2.0 3,091,663 - Xcc-8004.3171.1 0.19 +1.3 3,091,834 - Xcc-8004.3171.1 0.34 -0.2 3,091,881 + Xcc-8004.3171.1 0.38 +1.1 3,092,129 + Xcc-8004.3171.1 0.60 +0.1 3,092,130 - Xcc-8004.3171.1 0.60 -0.3 3,092,260 - Xcc-8004.3171.1 0.72 -1.4 3,092,260 - Xcc-8004.3171.1 0.72 -0.1 3,092,260 - Xcc-8004.3171.1 0.72 -1.0 3,092,499 + +0.3 3,092,499 + -2.0 3,092,499 + -1.3 3,092,500 - -0.0 3,092,508 + -1.6 3,092,508 + +0.1 3,092,544 - -2.7 3,092,544 - +0.9 3,092,584 + +1.4 3,092,585 - -2.0 3,092,638 + -0.1 3,092,796 + Xcc-8004.3172.1 0.23 +1.8 3,092,797 - Xcc-8004.3172.1 0.23 -1.2 3,092,905 + Xcc-8004.3172.1 0.34 -1.4 3,092,963 + Xcc-8004.3172.1 0.40 +0.7 3,092,963 + Xcc-8004.3172.1 0.40 -0.5 3,092,964 - Xcc-8004.3172.1 0.41 +0.8 3,093,005 + Xcc-8004.3172.1 0.45 -1.2 3,093,005 + Xcc-8004.3172.1 0.45 +1.6 3,093,043 + Xcc-8004.3172.1 0.49 -0.9 3,093,144 - Xcc-8004.3172.1 0.60 -1.7 3,093,144 - Xcc-8004.3172.1 0.60 +0.9 3,093,156 + Xcc-8004.3172.1 0.61 +0.2 3,093,157 - Xcc-8004.3172.1 0.61 +0.3 3,093,164 - Xcc-8004.3172.1 0.62 +0.1 3,093,199 + Xcc-8004.3172.1 0.66 -1.2 3,093,570 + -0.0 3,093,579 + -2.6 3,093,579 + -0.7
Or see this region's nucleotide sequence