Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.269.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.266.1 and Xcc-8004.268.1 are separated by 29 nucleotidesXcc-8004.268.1 and Xcc-8004.269.1 are separated by 88 nucleotidesXcc-8004.269.1 and Xcc-8004.270.1 are separated by 109 nucleotidesXcc-8004.270.1 and Xcc-8004.271.1 are separated by 17 nucleotides Xcc-8004.266.1: Xcc-8004.266.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 259,213 to 259,698 Xcc-8004.266.1 Xcc-8004.268.1: Xcc-8004.268.1 - FIG01210356: hypothetical protein, at 259,728 to 260,150 Xcc-8004.268.1 Xcc-8004.269.1: Xcc-8004.269.1 - FIG136845: Rhodanese-related sulfurtransferase, at 260,239 to 260,676 Xcc-8004.269.1 Xcc-8004.270.1: Xcc-8004.270.1 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 260,786 to 261,298 Xcc-8004.270.1 Xcc-8004.271.1: Xcc-8004.271.1 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 261,316 to 262,341 Xcc-8004.271.1 Position (kb) 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.421 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.483 kb on + strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.484 kb on - strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.507 kb on + strand, within Xcc-8004.266.1at 259.508 kb on - strand, within Xcc-8004.266.1at 259.508 kb on - strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.522 kb on + strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.523 kb on - strand, within Xcc-8004.266.1at 259.696 kb on + strandat 259.696 kb on + strandat 259.697 kb on - strandat 259.697 kb on - strandat 259.697 kb on - strandat 259.839 kb on + strand, within Xcc-8004.268.1at 259.839 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.899 kb on + strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.900 kb on - strand, within Xcc-8004.268.1at 259.942 kb on - strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.042 kb on + strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.043 kb on - strand, within Xcc-8004.268.1at 260.148 kb on + strandat 260.148 kb on + strandat 260.148 kb on + strandat 260.149 kb on - strandat 260.149 kb on - strandat 260.191 kb on - strandat 260.191 kb on - strandat 260.191 kb on - strandat 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.608 kb on + strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.609 kb on - strand, within Xcc-8004.269.1at 260.723 kb on - strandat 260.781 kb on + strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.782 kb on - strandat 260.864 kb on + strand, within Xcc-8004.270.1at 260.865 kb on - strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.035 kb on + strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.036 kb on - strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.140 kb on + strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.141 kb on - strand, within Xcc-8004.270.1at 261.194 kb on + strand, within Xcc-8004.270.1at 261.194 kb on + strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.195 kb on - strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.224 kb on + strand, within Xcc-8004.270.1at 261.225 kb on - strand, within Xcc-8004.270.1at 261.225 kb on - strand, within Xcc-8004.270.1at 261.296 kb on + strandat 261.296 kb on + strandat 261.297 kb on - strandat 261.297 kb on - strandat 261.297 kb on - strandat 261.473 kb on - strand, within Xcc-8004.271.1at 261.473 kb on - strand, within Xcc-8004.271.1at 261.473 kb on - strand, within Xcc-8004.271.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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259,421 + Xcc-8004.266.1 0.43 -0.5
259,421 + Xcc-8004.266.1 0.43 -0.1
259,421 + Xcc-8004.266.1 0.43 -0.3
259,421 + Xcc-8004.266.1 0.43 -1.1
259,483 + Xcc-8004.266.1 0.56 +2.3
259,483 + Xcc-8004.266.1 0.56 +0.1
259,483 + Xcc-8004.266.1 0.56 +0.9
259,483 + Xcc-8004.266.1 0.56 +2.4
259,483 + Xcc-8004.266.1 0.56 -2.0
259,483 + Xcc-8004.266.1 0.56 -1.3
259,483 + Xcc-8004.266.1 0.56 -0.5
259,483 + Xcc-8004.266.1 0.56 +0.7
259,483 + Xcc-8004.266.1 0.56 -0.3
259,484 - Xcc-8004.266.1 0.56 +0.3
259,484 - Xcc-8004.266.1 0.56 -1.2
259,484 - Xcc-8004.266.1 0.56 -1.1
259,484 - Xcc-8004.266.1 0.56 +0.2
259,484 - Xcc-8004.266.1 0.56 -2.1
259,484 - Xcc-8004.266.1 0.56 +0.3
259,484 - Xcc-8004.266.1 0.56 +0.5
259,484 - Xcc-8004.266.1 0.56 -0.2
259,484 - Xcc-8004.266.1 0.56 +0.4
259,484 - Xcc-8004.266.1 0.56 -1.6
259,507 + Xcc-8004.266.1 0.60 +0.6
259,507 + Xcc-8004.266.1 0.60 +1.6
259,507 + Xcc-8004.266.1 0.60 -0.7
259,507 + Xcc-8004.266.1 0.60 -2.5
259,507 + Xcc-8004.266.1 0.60 +2.0
259,507 + Xcc-8004.266.1 0.60 -1.3
259,508 - Xcc-8004.266.1 0.61 +0.0
259,508 - Xcc-8004.266.1 0.61 +1.3
259,522 + Xcc-8004.266.1 0.64 -0.5
259,522 + Xcc-8004.266.1 0.64 -0.1
259,522 + Xcc-8004.266.1 0.64 -0.1
259,523 - Xcc-8004.266.1 0.64 +0.0
259,523 - Xcc-8004.266.1 0.64 +0.5
259,523 - Xcc-8004.266.1 0.64 -0.2
259,523 - Xcc-8004.266.1 0.64 +0.6
259,523 - Xcc-8004.266.1 0.64 +1.7
259,696 + -3.1
259,696 + -2.5
259,697 - +0.0
259,697 - +0.3
259,697 - +2.0
259,839 + Xcc-8004.268.1 0.26 +0.0
259,839 + Xcc-8004.268.1 0.26 +0.5
259,899 + Xcc-8004.268.1 0.40 +0.7
259,899 + Xcc-8004.268.1 0.40 -2.5
259,899 + Xcc-8004.268.1 0.40 -0.4
259,899 + Xcc-8004.268.1 0.40 -0.1
259,899 + Xcc-8004.268.1 0.40 +0.5
259,899 + Xcc-8004.268.1 0.40 -0.1
259,899 + Xcc-8004.268.1 0.40 -1.3
259,899 + Xcc-8004.268.1 0.40 -0.1
259,899 + Xcc-8004.268.1 0.40 -0.6
259,899 + Xcc-8004.268.1 0.40 -0.2
259,900 - Xcc-8004.268.1 0.41 +0.1
259,900 - Xcc-8004.268.1 0.41 +0.4
259,900 - Xcc-8004.268.1 0.41 -1.6
259,900 - Xcc-8004.268.1 0.41 +0.0
259,900 - Xcc-8004.268.1 0.41 +0.2
259,900 - Xcc-8004.268.1 0.41 +0.1
259,900 - Xcc-8004.268.1 0.41 -0.7
259,900 - Xcc-8004.268.1 0.41 +0.6
259,900 - Xcc-8004.268.1 0.41 -1.4
259,900 - Xcc-8004.268.1 0.41 -1.2
259,900 - Xcc-8004.268.1 0.41 -0.4
259,942 - Xcc-8004.268.1 0.51 -2.1
260,042 + Xcc-8004.268.1 0.74 +1.7
260,042 + Xcc-8004.268.1 0.74 -0.5
260,042 + Xcc-8004.268.1 0.74 -0.3
260,043 - Xcc-8004.268.1 0.74 -0.2
260,043 - Xcc-8004.268.1 0.74 +0.1
260,043 - Xcc-8004.268.1 0.74 -0.8
260,043 - Xcc-8004.268.1 0.74 -1.1
260,043 - Xcc-8004.268.1 0.74 +0.5
260,148 + +1.1
260,148 + +0.6
260,148 + +0.7
260,149 - +2.7
260,149 - -0.5
260,191 - -0.5
260,191 - -2.0
260,191 - +0.6
260,608 + Xcc-8004.269.1 0.84 -0.4
260,608 + Xcc-8004.269.1 0.84 +0.2
260,608 + Xcc-8004.269.1 0.84 +1.7
260,608 + Xcc-8004.269.1 0.84 -1.6
260,608 + Xcc-8004.269.1 0.84 +1.3
260,609 - Xcc-8004.269.1 0.84 +0.4
260,609 - Xcc-8004.269.1 0.84 +0.4
260,609 - Xcc-8004.269.1 0.84 -0.4
260,723 - -0.7
260,781 + -0.9
260,782 - -0.1
260,782 - -0.7
260,782 - -1.5
260,782 - +0.3
260,782 - -0.3
260,864 + Xcc-8004.270.1 0.15 +1.6
260,865 - Xcc-8004.270.1 0.15 -0.3
261,035 + Xcc-8004.270.1 0.49 -1.2
261,035 + Xcc-8004.270.1 0.49 -1.6
261,036 - Xcc-8004.270.1 0.49 -0.7
261,036 - Xcc-8004.270.1 0.49 -0.7
261,036 - Xcc-8004.270.1 0.49 -0.5
261,140 + Xcc-8004.270.1 0.69 -1.1
261,140 + Xcc-8004.270.1 0.69 -0.9
261,140 + Xcc-8004.270.1 0.69 -0.1
261,140 + Xcc-8004.270.1 0.69 -1.2
261,140 + Xcc-8004.270.1 0.69 -0.3
261,140 + Xcc-8004.270.1 0.69 -1.2
261,141 - Xcc-8004.270.1 0.69 -0.1
261,141 - Xcc-8004.270.1 0.69 -0.5
261,141 - Xcc-8004.270.1 0.69 -0.5
261,141 - Xcc-8004.270.1 0.69 -0.2
261,194 + Xcc-8004.270.1 0.80 -2.1
261,194 + Xcc-8004.270.1 0.80 +0.8
261,195 - Xcc-8004.270.1 0.80 +0.5
261,195 - Xcc-8004.270.1 0.80 -0.7
261,195 - Xcc-8004.270.1 0.80 -0.2
261,224 + Xcc-8004.270.1 0.85 -0.6
261,224 + Xcc-8004.270.1 0.85 -1.2
261,224 + Xcc-8004.270.1 0.85 -1.8
261,225 - Xcc-8004.270.1 0.86 -0.9
261,225 - Xcc-8004.270.1 0.86 -0.1
261,296 + -2.8
261,296 + +0.1
261,297 - -0.1
261,297 - -1.5
261,297 - -0.1
261,473 - Xcc-8004.271.1 0.15 +0.0
261,473 - Xcc-8004.271.1 0.15 +2.3
261,473 - Xcc-8004.271.1 0.15 +3.3

Or see this region's nucleotide sequence