Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2193.1

Experiment: Xylemvessel barcodes T0L2P4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes T0L2P4
2,137,949	+		Xcc-8004.2192.1	0.54	-1.9
2,137,949	+		Xcc-8004.2192.1	0.54	-0.6
2,137,950	-		Xcc-8004.2192.1	0.54	+0.5
2,137,950	-		Xcc-8004.2192.1	0.54	-1.4
2,137,983	+		Xcc-8004.2192.1	0.57	-2.0
2,137,983	+		Xcc-8004.2192.1	0.57	+1.2
2,137,983	+		Xcc-8004.2192.1	0.57	+0.6
2,137,983	+		Xcc-8004.2192.1	0.57	+0.4
2,137,984	-		Xcc-8004.2192.1	0.57	+1.7
2,137,984	-		Xcc-8004.2192.1	0.57	-1.7
2,137,984	-		Xcc-8004.2192.1	0.57	-1.6
2,137,984	-		Xcc-8004.2192.1	0.57	-1.4
2,137,984	-		Xcc-8004.2192.1	0.57	-3.0
2,138,015	+		Xcc-8004.2192.1	0.59	-1.4
2,138,015	+		Xcc-8004.2192.1	0.59	+0.8
2,138,015	+		Xcc-8004.2192.1	0.59	-0.4
2,138,015	+		Xcc-8004.2192.1	0.59	-2.4
2,138,015	+		Xcc-8004.2192.1	0.59	-3.2
2,138,015	+		Xcc-8004.2192.1	0.59	+2.6
2,138,016	-		Xcc-8004.2192.1	0.59	+0.3
2,138,016	-		Xcc-8004.2192.1	0.59	+1.1
2,138,016	-		Xcc-8004.2192.1	0.59	-0.2
2,138,016	-		Xcc-8004.2192.1	0.59	-0.5
2,138,016	-		Xcc-8004.2192.1	0.59	-0.5
2,138,016	-		Xcc-8004.2192.1	0.59	-0.2
2,138,016	-		Xcc-8004.2192.1	0.59	-0.7
2,138,016	-		Xcc-8004.2192.1	0.59	+0.2
2,138,053	+		Xcc-8004.2192.1	0.62	-0.0
2,138,053	+		Xcc-8004.2192.1	0.62	+4.4
2,138,053	+		Xcc-8004.2192.1	0.62	+1.2
2,138,053	+		Xcc-8004.2192.1	0.62	-0.6
2,138,053	+		Xcc-8004.2192.1	0.62	+0.9
2,138,054	-		Xcc-8004.2192.1	0.62	-0.1
2,138,054	-		Xcc-8004.2192.1	0.62	+0.3
2,138,054	-		Xcc-8004.2192.1	0.62	-0.1
2,138,106	+		Xcc-8004.2192.1	0.66	+0.4
2,138,106	+		Xcc-8004.2192.1	0.66	+0.9
2,138,106	+		Xcc-8004.2192.1	0.66	+1.2
2,138,106	+		Xcc-8004.2192.1	0.66	-1.1
2,138,107	-		Xcc-8004.2192.1	0.66	-0.2
2,138,107	-		Xcc-8004.2192.1	0.66	+1.5
2,138,107	-		Xcc-8004.2192.1	0.66	-2.3
2,138,163	+		Xcc-8004.2192.1	0.70	+0.9
2,138,163	+		Xcc-8004.2192.1	0.70	-3.2
2,138,163	+		Xcc-8004.2192.1	0.70	+0.4
2,138,163	+		Xcc-8004.2192.1	0.70	+0.1
2,138,431	-		Xcc-8004.2192.1	0.90	+0.7
2,138,431	-		Xcc-8004.2192.1	0.90	-0.6
2,138,433	+		Xcc-8004.2192.1	0.90	+1.7
2,138,433	+		Xcc-8004.2192.1	0.90	-1.0
2,138,433	+		Xcc-8004.2192.1	0.90	+0.4
2,138,433	+		Xcc-8004.2192.1	0.90	-0.5
2,138,433	+		Xcc-8004.2192.1	0.90	-0.6
2,138,433	+		Xcc-8004.2192.1	0.90	-0.3
2,138,433	+		Xcc-8004.2192.1	0.90	-2.5
2,138,433	+		Xcc-8004.2192.1	0.90	-0.5
2,138,433	+		Xcc-8004.2192.1	0.90	+2.1
2,138,433	+		Xcc-8004.2192.1	0.90	+0.5
2,138,433	+		Xcc-8004.2192.1	0.90	-1.2
2,138,433	+		Xcc-8004.2192.1	0.90	+1.1
2,138,433	+		Xcc-8004.2192.1	0.90	+1.6
2,138,433	+		Xcc-8004.2192.1	0.90	-0.3
2,138,433	+		Xcc-8004.2192.1	0.90	-0.7
2,138,433	+		Xcc-8004.2192.1	0.90	+0.3
2,138,433	+		Xcc-8004.2192.1	0.90	+2.0
2,138,433	+		Xcc-8004.2192.1	0.90	-1.8
2,138,433	+		Xcc-8004.2192.1	0.90	+0.2
2,138,433	+		Xcc-8004.2192.1	0.90	-1.4
2,138,433	+		Xcc-8004.2192.1	0.90	-1.9
2,138,433	+		Xcc-8004.2192.1	0.90	+0.3
2,138,433	+		Xcc-8004.2192.1	0.90	+0.4
2,138,433	+		Xcc-8004.2192.1	0.90	-2.8
2,138,434	-				-1.1
2,138,434	-				-1.1
2,138,434	-				-1.5
2,138,434	-				-1.1
2,138,434	-				+1.6
2,138,434	-				-1.4
2,138,434	-				+2.4
2,138,434	-				+1.4
2,138,434	-				-2.0
2,138,434	-				+1.7
2,138,434	-				-0.7
2,138,434	-				-0.1
2,138,434	-				-0.3
2,138,434	-				-2.1
2,138,434	-				-0.9
2,138,434	-				-0.5
2,138,434	-				-1.6
2,138,434	-				+0.2
2,138,434	-				-2.8
2,138,434	-				+1.0
2,138,434	-				+0.3
2,138,434	-				-0.3
2,138,434	-				+2.0
2,138,434	-				+0.9
2,138,434	-				-2.1
2,138,601	+				-0.0
2,138,601	+				-2.1
2,138,601	+				-1.9
2,138,601	+				-2.4
2,138,602	-				-2.5
2,138,602	-				-1.1
2,138,671	+				-0.1
2,138,672	-				-1.1
2,138,677	+				-2.4
2,138,678	-				-1.2
2,138,678	-				+0.4
2,138,685	-				-3.0
2,138,692	-				+0.3
2,138,692	-				+0.9
2,138,692	-				-1.3
2,138,692	-				+0.8
2,138,692	-				+0.9
2,138,692	-				-0.1
2,138,692	-				+2.9
2,138,699	+				-0.5
2,138,699	+				-1.6
2,138,699	+				-0.9
2,138,700	-				+2.0
2,138,700	-				+1.8
2,138,700	-				-0.1
2,138,782	+				+1.6
2,138,782	+				+0.8
2,138,782	+				-0.3
2,138,783	-				-0.7
2,138,783	-				+0.5
2,138,783	-				-1.0
2,138,783	-				-0.2
2,138,783	-				+0.7
2,138,783	-				-2.3
2,138,783	-				-1.3
2,138,783	-				-0.2
2,138,783	-				-2.3
2,138,915	-				+1.6
2,138,923	+				+0.9
2,138,923	+				+1.2
2,138,923	+				+1.3
2,138,923	+				+2.1
2,138,923	+				-1.3
2,138,923	+				+1.5
2,138,923	+				+1.3
2,138,923	+				-0.1
2,138,923	+				-0.3
2,138,923	+				-0.9
2,138,924	-				-1.1
2,138,924	-				-0.1
2,138,924	-				+1.1
2,138,924	-				-0.2
2,138,924	-				+0.2
2,138,924	-				-1.9
2,138,924	-				+0.9
2,138,924	-				-1.7
2,138,924	-				+0.2
2,139,014	+				-0.4
2,139,015	-				-0.2
2,139,015	-				+0.8
2,139,073	-				-2.5
2,139,213	+		Xcc-8004.2193.1	0.17	-1.1
2,139,213	+		Xcc-8004.2193.1	0.17	+1.3
2,139,213	+		Xcc-8004.2193.1	0.17	+0.5
2,139,213	+		Xcc-8004.2193.1	0.17	-3.2
2,139,213	+		Xcc-8004.2193.1	0.17	-1.5
2,139,213	+		Xcc-8004.2193.1	0.17	-0.1
2,139,213	+		Xcc-8004.2193.1	0.17	+0.1
2,139,213	+		Xcc-8004.2193.1	0.17	-2.7
2,139,214	-		Xcc-8004.2193.1	0.17	-0.9
2,139,214	-		Xcc-8004.2193.1	0.17	-2.1
2,139,214	-		Xcc-8004.2193.1	0.17	-1.5
2,139,214	-		Xcc-8004.2193.1	0.17	+0.3
2,139,214	-		Xcc-8004.2193.1	0.17	-0.3
2,139,214	-		Xcc-8004.2193.1	0.17	-0.7
2,139,214	-		Xcc-8004.2193.1	0.17	-2.3
2,139,214	-		Xcc-8004.2193.1	0.17	-0.5
2,139,214	-		Xcc-8004.2193.1	0.17	-1.0
2,139,420	+		Xcc-8004.2193.1	0.29	-1.0
2,139,420	+		Xcc-8004.2193.1	0.29	+0.3
2,139,420	+		Xcc-8004.2193.1	0.29	-0.9
2,139,420	+		Xcc-8004.2193.1	0.29	+0.1
2,139,420	+		Xcc-8004.2193.1	0.29	-0.7
2,139,420	+		Xcc-8004.2193.1	0.29	+1.1
2,139,420	+		Xcc-8004.2193.1	0.29	-0.6
2,139,421	-		Xcc-8004.2193.1	0.29	-0.3
2,139,421	-		Xcc-8004.2193.1	0.29	-0.7
2,139,421	-		Xcc-8004.2193.1	0.29	-1.9
2,139,421	-		Xcc-8004.2193.1	0.29	-2.1
2,139,421	-		Xcc-8004.2193.1	0.29	-0.2
2,139,421	-		Xcc-8004.2193.1	0.29	+1.7
2,139,421	-		Xcc-8004.2193.1	0.29	-3.0
2,139,609	+		Xcc-8004.2193.1	0.41	+0.9
2,139,609	+		Xcc-8004.2193.1	0.41	+1.9
2,139,609	+		Xcc-8004.2193.1	0.41	+1.0
2,139,610	-		Xcc-8004.2193.1	0.41	-1.7
2,139,610	-		Xcc-8004.2193.1	0.41	+0.6
2,139,610	-		Xcc-8004.2193.1	0.41	+0.9
2,139,610	-		Xcc-8004.2193.1	0.41	-0.1
2,139,610	-		Xcc-8004.2193.1	0.41	+1.8
2,140,017	+		Xcc-8004.2193.1	0.65	+0.6
2,140,017	+		Xcc-8004.2193.1	0.65	-2.1
2,140,017	+		Xcc-8004.2193.1	0.65	+3.3
2,140,017	+		Xcc-8004.2193.1	0.65	-0.7
2,140,017	+		Xcc-8004.2193.1	0.65	-0.5
2,140,017	+		Xcc-8004.2193.1	0.65	-0.1
2,140,017	+		Xcc-8004.2193.1	0.65	-0.3
2,140,018	-		Xcc-8004.2193.1	0.65	+0.5
2,140,018	-		Xcc-8004.2193.1	0.65	-1.0
2,140,018	-		Xcc-8004.2193.1	0.65	+1.1
2,140,018	-		Xcc-8004.2193.1	0.65	-0.9
2,140,018	-		Xcc-8004.2193.1	0.65	-0.3
2,140,018	-		Xcc-8004.2193.1	0.65	-1.7
2,140,018	-		Xcc-8004.2193.1	0.65	-1.9
2,140,018	-		Xcc-8004.2193.1	0.65	+0.9
2,140,018	-		Xcc-8004.2193.1	0.65	-0.5
2,140,018	-		Xcc-8004.2193.1	0.65	-0.2
2,140,018	-		Xcc-8004.2193.1	0.65	+0.6
2,140,018	-		Xcc-8004.2193.1	0.65	-1.4
2,140,018	-		Xcc-8004.2193.1	0.65	+1.6
2,140,051	-		Xcc-8004.2193.1	0.67	+1.0
2,140,051	-		Xcc-8004.2193.1	0.67	-0.2
2,140,051	-		Xcc-8004.2193.1	0.67	-1.0
2,140,128	+		Xcc-8004.2193.1	0.71	-1.6
2,140,128	+		Xcc-8004.2193.1	0.71	+0.1
2,140,128	+		Xcc-8004.2193.1	0.71	+0.3
2,140,128	+		Xcc-8004.2193.1	0.71	-0.7
2,140,128	+		Xcc-8004.2193.1	0.71	-0.1
2,140,128	+		Xcc-8004.2193.1	0.71	-0.8
2,140,128	+		Xcc-8004.2193.1	0.71	+0.3
2,140,129	-		Xcc-8004.2193.1	0.71	-0.1
2,140,129	-		Xcc-8004.2193.1	0.71	-2.7
2,140,129	-		Xcc-8004.2193.1	0.71	+0.7
2,140,129	-		Xcc-8004.2193.1	0.71	-0.5
2,140,129	-		Xcc-8004.2193.1	0.71	-1.0
2,140,129	-		Xcc-8004.2193.1	0.71	-0.3
2,140,129	-		Xcc-8004.2193.1	0.71	-1.3
2,140,129	-		Xcc-8004.2193.1	0.71	-1.9
2,140,129	-		Xcc-8004.2193.1	0.71	+0.8
2,140,227	-		Xcc-8004.2193.1	0.77	-0.4
2,140,260	+		Xcc-8004.2193.1	0.79	+0.5
2,140,260	+		Xcc-8004.2193.1	0.79	-0.1
2,140,260	+		Xcc-8004.2193.1	0.79	+0.7
2,140,260	+		Xcc-8004.2193.1	0.79	-1.9
2,140,260	+		Xcc-8004.2193.1	0.79	-0.6
2,140,261	-		Xcc-8004.2193.1	0.79	-3.0
2,140,261	-		Xcc-8004.2193.1	0.79	+1.0
2,140,261	-		Xcc-8004.2193.1	0.79	-2.3
2,140,261	-		Xcc-8004.2193.1	0.79	-0.5
2,140,273	-		Xcc-8004.2193.1	0.80	-1.8
2,140,308	+		Xcc-8004.2193.1	0.82	-0.2
2,140,308	+		Xcc-8004.2193.1	0.82	-0.4
2,140,308	+		Xcc-8004.2193.1	0.82	-1.8
2,140,308	+		Xcc-8004.2193.1	0.82	+0.8
2,140,308	+		Xcc-8004.2193.1	0.82	-0.3
2,140,309	-		Xcc-8004.2193.1	0.82	-1.1
2,140,309	-		Xcc-8004.2193.1	0.82	-1.5
2,140,309	-		Xcc-8004.2193.1	0.82	-0.2
2,140,309	-		Xcc-8004.2193.1	0.82	-0.0
2,140,309	-		Xcc-8004.2193.1	0.82	+1.5
2,140,309	-		Xcc-8004.2193.1	0.82	-0.4
2,140,323	+		Xcc-8004.2193.1	0.83	+0.7
2,140,323	+		Xcc-8004.2193.1	0.83	+1.5
2,140,323	+		Xcc-8004.2193.1	0.83	-1.1
2,140,323	+		Xcc-8004.2193.1	0.83	+0.6
2,140,323	+		Xcc-8004.2193.1	0.83	-1.0
2,140,323	+		Xcc-8004.2193.1	0.83	-2.5
2,140,323	+		Xcc-8004.2193.1	0.83	+0.5
2,140,323	+		Xcc-8004.2193.1	0.83	-2.2
2,140,323	+		Xcc-8004.2193.1	0.83	-2.2
2,140,323	+		Xcc-8004.2193.1	0.83	+0.3
2,140,323	+		Xcc-8004.2193.1	0.83	-1.0
2,140,323	+		Xcc-8004.2193.1	0.83	+1.1
2,140,323	+		Xcc-8004.2193.1	0.83	+0.9
2,140,323	+		Xcc-8004.2193.1	0.83	+1.7
2,140,323	+		Xcc-8004.2193.1	0.83	-0.7
2,140,323	+		Xcc-8004.2193.1	0.83	-1.7
2,140,323	+		Xcc-8004.2193.1	0.83	-0.9
2,140,323	+		Xcc-8004.2193.1	0.83	+0.4
2,140,324	-		Xcc-8004.2193.1	0.83	-1.7
2,140,324	-		Xcc-8004.2193.1	0.83	+0.1
2,140,324	-		Xcc-8004.2193.1	0.83	-2.7
2,140,324	-		Xcc-8004.2193.1	0.83	-1.1
2,140,324	-		Xcc-8004.2193.1	0.83	-0.2
2,140,324	-		Xcc-8004.2193.1	0.83	-1.8
2,140,324	-		Xcc-8004.2193.1	0.83	+0.4
2,140,324	-		Xcc-8004.2193.1	0.83	-0.0
2,140,324	-		Xcc-8004.2193.1	0.83	+0.2
2,140,324	-		Xcc-8004.2193.1	0.83	+1.1
2,140,324	-		Xcc-8004.2193.1	0.83	+0.1
2,140,324	-		Xcc-8004.2193.1	0.83	-1.9
2,140,324	-		Xcc-8004.2193.1	0.83	-3.1
2,140,324	-		Xcc-8004.2193.1	0.83	+0.5
2,140,324	-		Xcc-8004.2193.1	0.83	-0.3
2,140,324	-		Xcc-8004.2193.1	0.83	+0.9
2,140,324	-		Xcc-8004.2193.1	0.83	-0.0
2,140,324	-		Xcc-8004.2193.1	0.83	-1.7
2,140,324	-		Xcc-8004.2193.1	0.83	-1.9
2,140,324	-		Xcc-8004.2193.1	0.83	+0.9
2,140,324	-		Xcc-8004.2193.1	0.83	+0.1
2,140,324	-		Xcc-8004.2193.1	0.83	-1.2
2,140,324	-		Xcc-8004.2193.1	0.83	+1.5
2,140,740	+		Xcc-8004.2194.1	0.15	-2.2
2,140,740	+		Xcc-8004.2194.1	0.15	+1.5
2,140,740	+		Xcc-8004.2194.1	0.15	-1.3
2,140,740	+		Xcc-8004.2194.1	0.15	-1.0
2,140,740	+		Xcc-8004.2194.1	0.15	-1.0
2,140,740	+		Xcc-8004.2194.1	0.15	+1.7
2,140,740	+		Xcc-8004.2194.1	0.15	+1.8
2,140,740	+		Xcc-8004.2194.1	0.15	+0.8
2,140,740	+		Xcc-8004.2194.1	0.15	+2.6
2,140,741	-		Xcc-8004.2194.1	0.15	-0.3
2,140,741	-		Xcc-8004.2194.1	0.15	+1.6
2,141,177	+		Xcc-8004.2194.1	0.67	+0.1
2,141,178	-		Xcc-8004.2194.1	0.67	-2.7
2,141,178	-		Xcc-8004.2194.1	0.67	+0.1
2,141,178	-		Xcc-8004.2194.1	0.67	-1.9
2,141,266	-		Xcc-8004.2194.1	0.77	+1.5
2,141,406	+				-2.1
2,141,406	+				-0.4
2,141,406	+				+0.5
2,141,407	-				-1.5
2,141,407	-				-1.3
2,141,407	-				-0.5
2,141,407	-				+0.3
2,141,480	+				-0.8
2,141,480	+				-0.3
2,141,480	+				+0.8
2,141,481	-				-0.3