Experiment: Xylemvessel barcodes T0L2P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1467.1 and Xcc-8004.1468.1 are separated by 587 nucleotides Xcc-8004.1468.1 and Xcc-8004.1469.1 are separated by 28 nucleotides Xcc-8004.1469.1 and Xcc-8004.1470.1 are separated by 341 nucleotides Xcc-8004.1470.1 and Xcc-8004.1471.1 are separated by 256 nucleotides
Xcc-8004.1467.1: Xcc-8004.1467.1 - FIG01210828: hypothetical protein, at 1,396,809 to 1,397,156
Xcc-8004.1467.1
Xcc-8004.1468.1: Xcc-8004.1468.1 - FIG01210319: hypothetical protein, at 1,397,744 to 1,398,106
Xcc-8004.1468.1
Xcc-8004.1469.1: Xcc-8004.1469.1 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 1,398,135 to 1,398,845
Xcc-8004.1469.1
Xcc-8004.1470.1: Xcc-8004.1470.1 - putative; ORF located using Glimmer/Genemark, at 1,399,187 to 1,399,333
Xcc-8004.1470.1
Xcc-8004.1471.1: Xcc-8004.1471.1 - hypothetical protein, at 1,399,590 to 1,399,856
Xcc-8004.1471.1
Position (kb) 1398
1399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1397.265 kb on + strand at 1397.266 kb on - strand at 1397.278 kb on - strand at 1397.281 kb on + strand at 1397.281 kb on + strand at 1397.282 kb on - strand at 1397.333 kb on - strand at 1397.388 kb on + strand at 1397.389 kb on - strand at 1397.428 kb on + strand at 1397.428 kb on + strand at 1397.428 kb on + strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.429 kb on - strand at 1397.469 kb on + strand at 1397.469 kb on + strand at 1397.470 kb on - strand at 1397.470 kb on - strand at 1397.490 kb on + strand at 1397.491 kb on - strand at 1397.549 kb on + strand at 1397.550 kb on - strand at 1397.550 kb on - strand at 1397.550 kb on - strand at 1397.568 kb on + strand at 1397.569 kb on - strand at 1397.569 kb on - strand at 1397.569 kb on - strand at 1397.624 kb on + strand at 1397.625 kb on - strand at 1397.671 kb on + strand at 1397.671 kb on + strand at 1397.671 kb on + strand at 1397.671 kb on + strand at 1397.671 kb on + strand at 1397.671 kb on + strand at 1397.672 kb on - strand at 1397.672 kb on - strand at 1397.672 kb on - strand at 1397.672 kb on - strand at 1397.672 kb on - strand at 1397.672 kb on - strand at 1397.676 kb on + strand at 1397.676 kb on + strand at 1397.676 kb on + strand at 1397.676 kb on + strand at 1397.677 kb on - strand at 1397.677 kb on - strand at 1397.677 kb on - strand at 1397.677 kb on - strand at 1397.677 kb on - strand at 1397.859 kb on + strand, within Xcc-8004.1468.1 at 1397.859 kb on + strand, within Xcc-8004.1468.1 at 1397.860 kb on - strand, within Xcc-8004.1468.1 at 1397.860 kb on - strand, within Xcc-8004.1468.1 at 1397.908 kb on + strand, within Xcc-8004.1468.1 at 1397.908 kb on + strand, within Xcc-8004.1468.1 at 1397.908 kb on + strand, within Xcc-8004.1468.1 at 1397.908 kb on + strand, within Xcc-8004.1468.1 at 1397.908 kb on + strand, within Xcc-8004.1468.1 at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.102 kb on + strand at 1398.103 kb on - strand at 1398.103 kb on - strand at 1398.103 kb on - strand at 1398.103 kb on - strand at 1398.122 kb on + strand at 1398.122 kb on + strand at 1398.122 kb on + strand at 1398.123 kb on - strand at 1398.123 kb on - strand at 1398.123 kb on - strand at 1398.123 kb on - strand at 1398.123 kb on - strand at 1398.207 kb on + strand, within Xcc-8004.1469.1 at 1398.207 kb on + strand, within Xcc-8004.1469.1 at 1398.207 kb on + strand, within Xcc-8004.1469.1 at 1398.207 kb on + strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.208 kb on - strand, within Xcc-8004.1469.1 at 1398.561 kb on + strand, within Xcc-8004.1469.1 at 1398.561 kb on + strand, within Xcc-8004.1469.1 at 1398.561 kb on + strand, within Xcc-8004.1469.1 at 1398.562 kb on - strand, within Xcc-8004.1469.1 at 1398.562 kb on - strand, within Xcc-8004.1469.1 at 1398.562 kb on - strand, within Xcc-8004.1469.1 at 1398.562 kb on - strand, within Xcc-8004.1469.1 at 1398.562 kb on - strand, within Xcc-8004.1469.1 at 1398.594 kb on + strand, within Xcc-8004.1469.1 at 1398.594 kb on + strand, within Xcc-8004.1469.1 at 1398.595 kb on - strand, within Xcc-8004.1469.1 at 1398.627 kb on + strand, within Xcc-8004.1469.1 at 1398.628 kb on - strand, within Xcc-8004.1469.1 at 1398.628 kb on - strand, within Xcc-8004.1469.1 at 1398.703 kb on + strand, within Xcc-8004.1469.1 at 1398.703 kb on + strand, within Xcc-8004.1469.1 at 1398.703 kb on + strand, within Xcc-8004.1469.1 at 1398.703 kb on + strand, within Xcc-8004.1469.1 at 1398.703 kb on + strand, within Xcc-8004.1469.1 at 1398.704 kb on - strand, within Xcc-8004.1469.1 at 1398.704 kb on - strand, within Xcc-8004.1469.1 at 1398.718 kb on + strand, within Xcc-8004.1469.1 at 1398.718 kb on + strand, within Xcc-8004.1469.1 at 1398.718 kb on + strand, within Xcc-8004.1469.1 at 1398.718 kb on + strand, within Xcc-8004.1469.1 at 1398.723 kb on + strand, within Xcc-8004.1469.1 at 1398.723 kb on + strand, within Xcc-8004.1469.1 at 1398.723 kb on + strand, within Xcc-8004.1469.1 at 1398.724 kb on - strand, within Xcc-8004.1469.1 at 1398.724 kb on - strand, within Xcc-8004.1469.1 at 1398.724 kb on - strand, within Xcc-8004.1469.1 at 1398.724 kb on - strand, within Xcc-8004.1469.1 at 1398.739 kb on + strand, within Xcc-8004.1469.1 at 1398.740 kb on - strand, within Xcc-8004.1469.1 at 1398.740 kb on - strand, within Xcc-8004.1469.1 at 1398.820 kb on - strand at 1399.035 kb on - strand at 1399.106 kb on + strand at 1399.106 kb on + strand at 1399.107 kb on - strand at 1399.107 kb on - strand at 1399.127 kb on + strand at 1399.128 kb on - strand at 1399.128 kb on - strand at 1399.128 kb on - strand at 1399.132 kb on + strand at 1399.132 kb on + strand at 1399.133 kb on - strand at 1399.133 kb on - strand at 1399.133 kb on - strand at 1399.133 kb on - strand at 1399.289 kb on - strand, within Xcc-8004.1470.1 at 1399.345 kb on + strand at 1399.345 kb on + strand at 1399.430 kb on - strand at 1399.598 kb on - strand at 1399.676 kb on + strand, within Xcc-8004.1471.1 at 1399.676 kb on + strand, within Xcc-8004.1471.1 at 1399.676 kb on + strand, within Xcc-8004.1471.1 at 1399.676 kb on + strand, within Xcc-8004.1471.1 at 1399.676 kb on + strand, within Xcc-8004.1471.1 at 1399.677 kb on - strand, within Xcc-8004.1471.1 at 1399.677 kb on - strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.678 kb on + strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.679 kb on - strand, within Xcc-8004.1471.1 at 1399.695 kb on + strand, within Xcc-8004.1471.1 at 1399.695 kb on + strand, within Xcc-8004.1471.1 at 1399.696 kb on - strand, within Xcc-8004.1471.1 at 1399.696 kb on - strand, within Xcc-8004.1471.1 at 1399.706 kb on + strand, within Xcc-8004.1471.1 at 1399.707 kb on - strand, within Xcc-8004.1471.1 at 1399.771 kb on + strand, within Xcc-8004.1471.1 at 1399.771 kb on + strand, within Xcc-8004.1471.1 at 1399.771 kb on + strand, within Xcc-8004.1471.1 at 1399.771 kb on + strand, within Xcc-8004.1471.1 at 1399.772 kb on - strand, within Xcc-8004.1471.1 at 1399.772 kb on - strand, within Xcc-8004.1471.1 at 1399.772 kb on - strand, within Xcc-8004.1471.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4 remove 1,397,265 + -1.4 1,397,266 - +0.3 1,397,278 - -0.8 1,397,281 + +1.7 1,397,281 + -0.5 1,397,282 - -1.4 1,397,333 - +0.6 1,397,388 + +0.4 1,397,389 - -0.9 1,397,428 + +1.5 1,397,428 + -0.7 1,397,428 + -0.3 1,397,429 - +1.2 1,397,429 - +0.9 1,397,429 - +0.7 1,397,429 - +0.4 1,397,429 - -0.5 1,397,429 - -0.7 1,397,429 - -2.1 1,397,429 - -3.0 1,397,469 + +0.6 1,397,469 + +0.0 1,397,470 - -0.3 1,397,470 - +1.7 1,397,490 + -0.2 1,397,491 - +1.0 1,397,549 + -1.0 1,397,550 - -0.0 1,397,550 - -1.7 1,397,550 - -0.7 1,397,568 + -1.7 1,397,569 - +0.7 1,397,569 - +1.6 1,397,569 - +1.0 1,397,624 + -0.5 1,397,625 - -1.3 1,397,671 + -2.3 1,397,671 + -2.0 1,397,671 + -1.3 1,397,671 + -1.3 1,397,671 + +1.7 1,397,671 + -0.1 1,397,672 - +1.7 1,397,672 - -1.0 1,397,672 - -1.0 1,397,672 - +0.3 1,397,672 - -0.1 1,397,672 - -2.1 1,397,676 + -1.0 1,397,676 + +0.2 1,397,676 + +1.0 1,397,676 + +0.4 1,397,677 - +1.0 1,397,677 - +1.4 1,397,677 - -1.6 1,397,677 - +0.3 1,397,677 - -1.4 1,397,859 + Xcc-8004.1468.1 0.32 +0.5 1,397,859 + Xcc-8004.1468.1 0.32 -1.1 1,397,860 - Xcc-8004.1468.1 0.32 -1.5 1,397,860 - Xcc-8004.1468.1 0.32 -1.4 1,397,908 + Xcc-8004.1468.1 0.45 -0.4 1,397,908 + Xcc-8004.1468.1 0.45 -0.7 1,397,908 + Xcc-8004.1468.1 0.45 -1.7 1,397,908 + Xcc-8004.1468.1 0.45 -1.3 1,397,908 + Xcc-8004.1468.1 0.45 -1.0 1,398,102 + -0.4 1,398,102 + -1.0 1,398,102 + -0.1 1,398,102 + -0.4 1,398,102 + -2.2 1,398,102 + +1.3 1,398,102 + -0.8 1,398,102 + +0.7 1,398,103 - -1.7 1,398,103 - -2.0 1,398,103 - +0.0 1,398,103 - +0.9 1,398,122 + +0.2 1,398,122 + -1.0 1,398,122 + +0.7 1,398,123 - -0.8 1,398,123 - -0.0 1,398,123 - -0.5 1,398,123 - +0.8 1,398,123 - +0.8 1,398,207 + Xcc-8004.1469.1 0.10 +0.3 1,398,207 + Xcc-8004.1469.1 0.10 +0.9 1,398,207 + Xcc-8004.1469.1 0.10 -2.2 1,398,207 + Xcc-8004.1469.1 0.10 +0.6 1,398,208 - Xcc-8004.1469.1 0.10 +1.3 1,398,208 - Xcc-8004.1469.1 0.10 +0.6 1,398,208 - Xcc-8004.1469.1 0.10 +1.5 1,398,208 - Xcc-8004.1469.1 0.10 +0.6 1,398,208 - Xcc-8004.1469.1 0.10 +1.3 1,398,208 - Xcc-8004.1469.1 0.10 +1.6 1,398,561 + Xcc-8004.1469.1 0.60 +1.3 1,398,561 + Xcc-8004.1469.1 0.60 +0.9 1,398,561 + Xcc-8004.1469.1 0.60 -2.3 1,398,562 - Xcc-8004.1469.1 0.60 -0.9 1,398,562 - Xcc-8004.1469.1 0.60 +1.5 1,398,562 - Xcc-8004.1469.1 0.60 -0.0 1,398,562 - Xcc-8004.1469.1 0.60 -0.7 1,398,562 - Xcc-8004.1469.1 0.60 -0.6 1,398,594 + Xcc-8004.1469.1 0.65 +0.3 1,398,594 + Xcc-8004.1469.1 0.65 +2.3 1,398,595 - Xcc-8004.1469.1 0.65 +1.3 1,398,627 + Xcc-8004.1469.1 0.69 +0.6 1,398,628 - Xcc-8004.1469.1 0.69 -1.9 1,398,628 - Xcc-8004.1469.1 0.69 +2.1 1,398,703 + Xcc-8004.1469.1 0.80 -1.2 1,398,703 + Xcc-8004.1469.1 0.80 -2.1 1,398,703 + Xcc-8004.1469.1 0.80 -0.8 1,398,703 + Xcc-8004.1469.1 0.80 -2.2 1,398,703 + Xcc-8004.1469.1 0.80 -1.1 1,398,704 - Xcc-8004.1469.1 0.80 +1.1 1,398,704 - Xcc-8004.1469.1 0.80 +1.2 1,398,718 + Xcc-8004.1469.1 0.82 +0.2 1,398,718 + Xcc-8004.1469.1 0.82 +1.7 1,398,718 + Xcc-8004.1469.1 0.82 +0.4 1,398,718 + Xcc-8004.1469.1 0.82 -3.2 1,398,723 + Xcc-8004.1469.1 0.83 +1.8 1,398,723 + Xcc-8004.1469.1 0.83 +0.2 1,398,723 + Xcc-8004.1469.1 0.83 +2.8 1,398,724 - Xcc-8004.1469.1 0.83 -0.8 1,398,724 - Xcc-8004.1469.1 0.83 -0.1 1,398,724 - Xcc-8004.1469.1 0.83 +1.9 1,398,724 - Xcc-8004.1469.1 0.83 +0.5 1,398,739 + Xcc-8004.1469.1 0.85 -1.7 1,398,740 - Xcc-8004.1469.1 0.85 +1.2 1,398,740 - Xcc-8004.1469.1 0.85 -1.8 1,398,820 - -0.6 1,399,035 - -0.3 1,399,106 + -0.2 1,399,106 + -0.5 1,399,107 - +0.8 1,399,107 - +0.4 1,399,127 + +0.7 1,399,128 - +2.4 1,399,128 - -0.2 1,399,128 - -2.0 1,399,132 + -1.0 1,399,132 + +1.6 1,399,133 - +1.9 1,399,133 - +0.4 1,399,133 - -1.0 1,399,133 - +1.2 1,399,289 - Xcc-8004.1470.1 0.69 -0.5 1,399,345 + +0.3 1,399,345 + +0.1 1,399,430 - -0.3 1,399,598 - +0.1 1,399,676 + Xcc-8004.1471.1 0.32 +1.2 1,399,676 + Xcc-8004.1471.1 0.32 +0.9 1,399,676 + Xcc-8004.1471.1 0.32 -1.4 1,399,676 + Xcc-8004.1471.1 0.32 +1.2 1,399,676 + Xcc-8004.1471.1 0.32 -0.3 1,399,677 - Xcc-8004.1471.1 0.33 +0.1 1,399,677 - Xcc-8004.1471.1 0.33 -1.2 1,399,678 + Xcc-8004.1471.1 0.33 +0.4 1,399,678 + Xcc-8004.1471.1 0.33 +0.6 1,399,678 + Xcc-8004.1471.1 0.33 +1.4 1,399,678 + Xcc-8004.1471.1 0.33 -1.3 1,399,678 + Xcc-8004.1471.1 0.33 -2.0 1,399,678 + Xcc-8004.1471.1 0.33 -2.0 1,399,678 + Xcc-8004.1471.1 0.33 +0.3 1,399,678 + Xcc-8004.1471.1 0.33 +0.2 1,399,678 + Xcc-8004.1471.1 0.33 -0.5 1,399,679 - Xcc-8004.1471.1 0.33 +0.5 1,399,679 - Xcc-8004.1471.1 0.33 -0.4 1,399,679 - Xcc-8004.1471.1 0.33 +1.3 1,399,679 - Xcc-8004.1471.1 0.33 +0.1 1,399,679 - Xcc-8004.1471.1 0.33 +0.4 1,399,679 - Xcc-8004.1471.1 0.33 -0.6 1,399,679 - Xcc-8004.1471.1 0.33 -1.3 1,399,679 - Xcc-8004.1471.1 0.33 +0.2 1,399,679 - Xcc-8004.1471.1 0.33 +1.0 1,399,679 - Xcc-8004.1471.1 0.33 -2.9 1,399,695 + Xcc-8004.1471.1 0.39 +0.6 1,399,695 + Xcc-8004.1471.1 0.39 -2.6 1,399,696 - Xcc-8004.1471.1 0.40 -0.5 1,399,696 - Xcc-8004.1471.1 0.40 -0.5 1,399,706 + Xcc-8004.1471.1 0.43 -0.5 1,399,707 - Xcc-8004.1471.1 0.44 -0.8 1,399,771 + Xcc-8004.1471.1 0.68 +0.2 1,399,771 + Xcc-8004.1471.1 0.68 -0.7 1,399,771 + Xcc-8004.1471.1 0.68 -0.3 1,399,771 + Xcc-8004.1471.1 0.68 -0.5 1,399,772 - Xcc-8004.1471.1 0.68 -2.2 1,399,772 - Xcc-8004.1471.1 0.68 -0.7 1,399,772 - Xcc-8004.1471.1 0.68 -0.0
Or see this region's nucleotide sequence