Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1461.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1458.1 and Xcc-8004.1459.1 overlap by 4 nucleotidesXcc-8004.1459.1 and Xcc-8004.1461.1 are separated by 135 nucleotidesXcc-8004.1461.1 and Xcc-8004.1462.1 are separated by 569 nucleotides Xcc-8004.1458.1: Xcc-8004.1458.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,389,216 to 1,390,226 Xcc-8004.1458.1 Xcc-8004.1459.1: Xcc-8004.1459.1 - Two-component system regulatory protein, at 1,390,223 to 1,390,573 Xcc-8004.1459.1 Xcc-8004.1461.1: Xcc-8004.1461.1 - FIG01210395: hypothetical protein, at 1,390,709 to 1,391,962 Xcc-8004.1461.1 Xcc-8004.1462.1: Xcc-8004.1462.1 - Chloride channel protein, at 1,392,532 to 1,394,331 Xcc-8004.1462.1 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1389.771 kb on - strand, within Xcc-8004.1458.1at 1390.236 kb on + strandat 1390.236 kb on + strandat 1390.237 kb on - strandat 1390.245 kb on + strandat 1390.245 kb on + strandat 1390.245 kb on + strandat 1390.246 kb on - strandat 1390.246 kb on - strandat 1390.246 kb on - strandat 1390.301 kb on + strand, within Xcc-8004.1459.1at 1390.301 kb on + strand, within Xcc-8004.1459.1at 1390.302 kb on - strand, within Xcc-8004.1459.1at 1390.448 kb on + strand, within Xcc-8004.1459.1at 1390.448 kb on + strand, within Xcc-8004.1459.1at 1390.448 kb on + strand, within Xcc-8004.1459.1at 1390.448 kb on + strand, within Xcc-8004.1459.1at 1390.448 kb on + strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.449 kb on - strand, within Xcc-8004.1459.1at 1390.450 kb on + strand, within Xcc-8004.1459.1at 1390.450 kb on + strand, within Xcc-8004.1459.1at 1390.450 kb on + strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.451 kb on - strand, within Xcc-8004.1459.1at 1390.466 kb on + strand, within Xcc-8004.1459.1at 1390.466 kb on + strand, within Xcc-8004.1459.1at 1390.620 kb on + strandat 1390.620 kb on + strandat 1390.620 kb on + strandat 1390.620 kb on + strandat 1390.620 kb on + strandat 1390.786 kb on + strandat 1390.786 kb on + strandat 1390.787 kb on - strandat 1390.787 kb on - strandat 1390.787 kb on - strandat 1391.008 kb on - strand, within Xcc-8004.1461.1at 1391.025 kb on + strand, within Xcc-8004.1461.1at 1391.025 kb on + strand, within Xcc-8004.1461.1at 1391.025 kb on + strand, within Xcc-8004.1461.1at 1391.026 kb on - strand, within Xcc-8004.1461.1at 1391.148 kb on + strand, within Xcc-8004.1461.1at 1391.148 kb on + strand, within Xcc-8004.1461.1at 1391.149 kb on - strand, within Xcc-8004.1461.1at 1391.149 kb on - strand, within Xcc-8004.1461.1at 1391.160 kb on + strand, within Xcc-8004.1461.1at 1391.161 kb on - strand, within Xcc-8004.1461.1at 1391.187 kb on + strand, within Xcc-8004.1461.1at 1391.187 kb on + strand, within Xcc-8004.1461.1at 1391.187 kb on + strand, within Xcc-8004.1461.1at 1391.187 kb on + strand, within Xcc-8004.1461.1at 1391.227 kb on + strand, within Xcc-8004.1461.1at 1391.228 kb on - strand, within Xcc-8004.1461.1at 1391.230 kb on + strand, within Xcc-8004.1461.1at 1391.231 kb on - strand, within Xcc-8004.1461.1at 1391.245 kb on + strand, within Xcc-8004.1461.1at 1391.245 kb on + strand, within Xcc-8004.1461.1at 1391.373 kb on + strand, within Xcc-8004.1461.1at 1391.484 kb on + strand, within Xcc-8004.1461.1at 1391.484 kb on + strand, within Xcc-8004.1461.1at 1391.485 kb on - strand, within Xcc-8004.1461.1at 1391.485 kb on - strand, within Xcc-8004.1461.1at 1391.485 kb on - strand, within Xcc-8004.1461.1at 1391.499 kb on + strand, within Xcc-8004.1461.1at 1391.500 kb on - strand, within Xcc-8004.1461.1at 1391.500 kb on - strand, within Xcc-8004.1461.1at 1391.523 kb on + strand, within Xcc-8004.1461.1at 1391.523 kb on + strand, within Xcc-8004.1461.1at 1391.544 kb on + strand, within Xcc-8004.1461.1at 1391.544 kb on + strand, within Xcc-8004.1461.1at 1391.745 kb on + strand, within Xcc-8004.1461.1at 1391.745 kb on + strand, within Xcc-8004.1461.1at 1391.858 kb on + strandat 1391.858 kb on + strandat 1392.127 kb on + strandat 1392.127 kb on + strandat 1392.127 kb on + strandat 1392.128 kb on - strandat 1392.128 kb on - strandat 1392.128 kb on - strandat 1392.230 kb on - strandat 1392.429 kb on + strandat 1392.429 kb on + strandat 1392.429 kb on + strandat 1392.567 kb on - strandat 1392.567 kb on - strandat 1392.567 kb on - strandat 1392.692 kb on + strandat 1392.692 kb on + strandat 1392.692 kb on + strandat 1392.692 kb on + strandat 1392.692 kb on + strandat 1392.693 kb on - strandat 1392.693 kb on - strandat 1392.730 kb on + strand, within Xcc-8004.1462.1at 1392.760 kb on - strand, within Xcc-8004.1462.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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1,389,771 - Xcc-8004.1458.1 0.55 -1.6
1,390,236 + -2.9
1,390,236 + -0.9
1,390,237 - +1.0
1,390,245 + +0.2
1,390,245 + +0.6
1,390,245 + -1.2
1,390,246 - -0.5
1,390,246 - -1.9
1,390,246 - -1.3
1,390,301 + Xcc-8004.1459.1 0.22 -1.9
1,390,301 + Xcc-8004.1459.1 0.22 -2.1
1,390,302 - Xcc-8004.1459.1 0.23 -2.3
1,390,448 + Xcc-8004.1459.1 0.64 +0.3
1,390,448 + Xcc-8004.1459.1 0.64 +0.9
1,390,448 + Xcc-8004.1459.1 0.64 -0.2
1,390,448 + Xcc-8004.1459.1 0.64 +0.3
1,390,448 + Xcc-8004.1459.1 0.64 +1.0
1,390,449 - Xcc-8004.1459.1 0.64 -0.5
1,390,449 - Xcc-8004.1459.1 0.64 +0.1
1,390,449 - Xcc-8004.1459.1 0.64 -1.8
1,390,449 - Xcc-8004.1459.1 0.64 +0.2
1,390,449 - Xcc-8004.1459.1 0.64 -0.4
1,390,449 - Xcc-8004.1459.1 0.64 -0.0
1,390,450 + Xcc-8004.1459.1 0.65 +1.6
1,390,450 + Xcc-8004.1459.1 0.65 -1.8
1,390,450 + Xcc-8004.1459.1 0.65 +0.3
1,390,451 - Xcc-8004.1459.1 0.65 +1.3
1,390,451 - Xcc-8004.1459.1 0.65 +0.5
1,390,451 - Xcc-8004.1459.1 0.65 -1.9
1,390,451 - Xcc-8004.1459.1 0.65 -2.0
1,390,451 - Xcc-8004.1459.1 0.65 -1.5
1,390,451 - Xcc-8004.1459.1 0.65 -0.5
1,390,466 + Xcc-8004.1459.1 0.69 +0.6
1,390,466 + Xcc-8004.1459.1 0.69 -2.2
1,390,620 + -0.5
1,390,620 + +1.4
1,390,620 + +0.4
1,390,620 + +0.7
1,390,620 + -0.3
1,390,786 + +0.4
1,390,786 + +0.7
1,390,787 - +1.5
1,390,787 - -1.7
1,390,787 - -2.4
1,391,008 - Xcc-8004.1461.1 0.24 +1.7
1,391,025 + Xcc-8004.1461.1 0.25 +0.7
1,391,025 + Xcc-8004.1461.1 0.25 +0.3
1,391,025 + Xcc-8004.1461.1 0.25 +0.3
1,391,026 - Xcc-8004.1461.1 0.25 -0.2
1,391,148 + Xcc-8004.1461.1 0.35 +1.2
1,391,148 + Xcc-8004.1461.1 0.35 -3.0
1,391,149 - Xcc-8004.1461.1 0.35 -2.2
1,391,149 - Xcc-8004.1461.1 0.35 -1.3
1,391,160 + Xcc-8004.1461.1 0.36 +1.0
1,391,161 - Xcc-8004.1461.1 0.36 -0.3
1,391,187 + Xcc-8004.1461.1 0.38 -1.4
1,391,187 + Xcc-8004.1461.1 0.38 -2.8
1,391,187 + Xcc-8004.1461.1 0.38 -0.0
1,391,187 + Xcc-8004.1461.1 0.38 -1.0
1,391,227 + Xcc-8004.1461.1 0.41 +0.1
1,391,228 - Xcc-8004.1461.1 0.41 +0.9
1,391,230 + Xcc-8004.1461.1 0.42 +1.1
1,391,231 - Xcc-8004.1461.1 0.42 -0.3
1,391,245 + Xcc-8004.1461.1 0.43 +0.6
1,391,245 + Xcc-8004.1461.1 0.43 +2.0
1,391,373 + Xcc-8004.1461.1 0.53 +0.4
1,391,484 + Xcc-8004.1461.1 0.62 -0.4
1,391,484 + Xcc-8004.1461.1 0.62 -1.8
1,391,485 - Xcc-8004.1461.1 0.62 -0.2
1,391,485 - Xcc-8004.1461.1 0.62 +0.5
1,391,485 - Xcc-8004.1461.1 0.62 +2.1
1,391,499 + Xcc-8004.1461.1 0.63 +0.7
1,391,500 - Xcc-8004.1461.1 0.63 +1.2
1,391,500 - Xcc-8004.1461.1 0.63 +0.2
1,391,523 + Xcc-8004.1461.1 0.65 +0.4
1,391,523 + Xcc-8004.1461.1 0.65 -0.3
1,391,544 + Xcc-8004.1461.1 0.67 -1.8
1,391,544 + Xcc-8004.1461.1 0.67 +0.9
1,391,745 + Xcc-8004.1461.1 0.83 +1.9
1,391,745 + Xcc-8004.1461.1 0.83 -0.7
1,391,858 + +1.1
1,391,858 + +0.4
1,392,127 + -0.8
1,392,127 + +0.1
1,392,127 + +0.1
1,392,128 - -0.4
1,392,128 - +0.7
1,392,128 - +0.4
1,392,230 - -2.3
1,392,429 + -0.9
1,392,429 + +0.2
1,392,429 + -0.4
1,392,567 - -0.3
1,392,567 - -1.8
1,392,567 - -0.2
1,392,692 + +5.6
1,392,692 + -2.3
1,392,692 + +1.6
1,392,692 + -0.3
1,392,692 + -0.6
1,392,693 - +0.9
1,392,693 - +1.1
1,392,730 + Xcc-8004.1462.1 0.11 +0.3
1,392,760 - Xcc-8004.1462.1 0.13 +2.0

Or see this region's nucleotide sequence