Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1111.1

Experiment: Xylemvessel barcodes T0L2P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1110.1 and Xcc-8004.1111.1 are separated by 211 nucleotidesXcc-8004.1111.1 and Xcc-8004.1112.1 are separated by 125 nucleotidesXcc-8004.1112.1 and Xcc-8004.1113.1 overlap by 68 nucleotides Xcc-8004.1110.1: Xcc-8004.1110.1 - DedA protein, at 1,056,170 to 1,058,200 Xcc-8004.1110.1 Xcc-8004.1111.1: Xcc-8004.1111.1 - FIG01211770: hypothetical protein, at 1,058,412 to 1,059,071 Xcc-8004.1111.1 Xcc-8004.1112.1: Xcc-8004.1112.1 - Short chain dehydrogenase, at 1,059,197 to 1,060,012 Xcc-8004.1112.1 Xcc-8004.1113.1: Xcc-8004.1113.1 - hypothetical protein, at 1,059,945 to 1,060,547 Xcc-8004.1113.1 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1057.656 kb on + strand, within Xcc-8004.1110.1at 1057.656 kb on + strand, within Xcc-8004.1110.1at 1057.656 kb on + strand, within Xcc-8004.1110.1at 1057.656 kb on + strand, within Xcc-8004.1110.1at 1057.656 kb on + strand, within Xcc-8004.1110.1at 1057.657 kb on - strand, within Xcc-8004.1110.1at 1057.657 kb on - strand, within Xcc-8004.1110.1at 1057.746 kb on + strand, within Xcc-8004.1110.1at 1057.746 kb on + strand, within Xcc-8004.1110.1at 1057.746 kb on + strand, within Xcc-8004.1110.1at 1057.746 kb on + strand, within Xcc-8004.1110.1at 1057.747 kb on - strand, within Xcc-8004.1110.1at 1057.747 kb on - strand, within Xcc-8004.1110.1at 1057.747 kb on - strand, within Xcc-8004.1110.1at 1057.824 kb on + strand, within Xcc-8004.1110.1at 1057.824 kb on + strand, within Xcc-8004.1110.1at 1057.825 kb on - strand, within Xcc-8004.1110.1at 1057.890 kb on + strand, within Xcc-8004.1110.1at 1057.890 kb on + strand, within Xcc-8004.1110.1at 1057.891 kb on - strand, within Xcc-8004.1110.1at 1057.891 kb on - strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.980 kb on + strand, within Xcc-8004.1110.1at 1057.981 kb on - strand, within Xcc-8004.1110.1at 1057.981 kb on - strand, within Xcc-8004.1110.1at 1057.981 kb on - strand, within Xcc-8004.1110.1at 1057.981 kb on - strand, within Xcc-8004.1110.1at 1058.070 kb on + strandat 1058.071 kb on - strandat 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.262 kb on + strandat 1058.263 kb on - strandat 1058.263 kb on - strandat 1058.401 kb on + strandat 1058.401 kb on + strandat 1058.402 kb on - strandat 1058.649 kb on + strand, within Xcc-8004.1111.1at 1058.650 kb on - strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.670 kb on + strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.671 kb on - strand, within Xcc-8004.1111.1at 1058.701 kb on - strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.884 kb on + strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.885 kb on - strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.913 kb on + strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.914 kb on - strand, within Xcc-8004.1111.1at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1059.006 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.190 kb on + strandat 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.962 kb on + strandat 1059.990 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L2P4
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1,057,656 + Xcc-8004.1110.1 0.73 +0.7
1,057,656 + Xcc-8004.1110.1 0.73 +0.7
1,057,656 + Xcc-8004.1110.1 0.73 -1.6
1,057,656 + Xcc-8004.1110.1 0.73 +0.3
1,057,656 + Xcc-8004.1110.1 0.73 +0.9
1,057,657 - Xcc-8004.1110.1 0.73 +1.3
1,057,657 - Xcc-8004.1110.1 0.73 -2.2
1,057,746 + Xcc-8004.1110.1 0.78 +0.7
1,057,746 + Xcc-8004.1110.1 0.78 -0.9
1,057,746 + Xcc-8004.1110.1 0.78 -1.6
1,057,746 + Xcc-8004.1110.1 0.78 -0.0
1,057,747 - Xcc-8004.1110.1 0.78 +1.8
1,057,747 - Xcc-8004.1110.1 0.78 -0.5
1,057,747 - Xcc-8004.1110.1 0.78 +1.0
1,057,824 + Xcc-8004.1110.1 0.81 +0.8
1,057,824 + Xcc-8004.1110.1 0.81 +3.3
1,057,825 - Xcc-8004.1110.1 0.81 +2.0
1,057,890 + Xcc-8004.1110.1 0.85 -1.2
1,057,890 + Xcc-8004.1110.1 0.85 -1.4
1,057,891 - Xcc-8004.1110.1 0.85 -1.8
1,057,891 - Xcc-8004.1110.1 0.85 -0.1
1,057,980 + Xcc-8004.1110.1 0.89 +1.3
1,057,980 + Xcc-8004.1110.1 0.89 +0.1
1,057,980 + Xcc-8004.1110.1 0.89 -1.0
1,057,980 + Xcc-8004.1110.1 0.89 -0.9
1,057,980 + Xcc-8004.1110.1 0.89 +1.5
1,057,980 + Xcc-8004.1110.1 0.89 +0.4
1,057,980 + Xcc-8004.1110.1 0.89 -0.5
1,057,980 + Xcc-8004.1110.1 0.89 -1.3
1,057,980 + Xcc-8004.1110.1 0.89 +0.4
1,057,980 + Xcc-8004.1110.1 0.89 +1.6
1,057,981 - Xcc-8004.1110.1 0.89 -2.4
1,057,981 - Xcc-8004.1110.1 0.89 -0.9
1,057,981 - Xcc-8004.1110.1 0.89 +2.2
1,057,981 - Xcc-8004.1110.1 0.89 +1.1
1,058,070 + +0.1
1,058,071 - +1.1
1,058,262 + +1.7
1,058,262 + -0.4
1,058,262 + -0.1
1,058,262 + +0.2
1,058,263 - -0.3
1,058,263 - -1.2
1,058,401 + +3.0
1,058,401 + -1.5
1,058,402 - +0.3
1,058,649 + Xcc-8004.1111.1 0.36 -0.4
1,058,650 - Xcc-8004.1111.1 0.36 +2.7
1,058,670 + Xcc-8004.1111.1 0.39 -0.8
1,058,670 + Xcc-8004.1111.1 0.39 -1.0
1,058,670 + Xcc-8004.1111.1 0.39 -0.9
1,058,670 + Xcc-8004.1111.1 0.39 +0.9
1,058,670 + Xcc-8004.1111.1 0.39 +0.3
1,058,671 - Xcc-8004.1111.1 0.39 +0.3
1,058,671 - Xcc-8004.1111.1 0.39 -2.0
1,058,671 - Xcc-8004.1111.1 0.39 -2.3
1,058,671 - Xcc-8004.1111.1 0.39 +0.8
1,058,671 - Xcc-8004.1111.1 0.39 -2.3
1,058,701 - Xcc-8004.1111.1 0.44 -0.5
1,058,884 + Xcc-8004.1111.1 0.72 +1.0
1,058,884 + Xcc-8004.1111.1 0.72 +0.6
1,058,884 + Xcc-8004.1111.1 0.72 -0.0
1,058,884 + Xcc-8004.1111.1 0.72 +0.2
1,058,885 - Xcc-8004.1111.1 0.72 -2.2
1,058,885 - Xcc-8004.1111.1 0.72 +2.1
1,058,885 - Xcc-8004.1111.1 0.72 +0.8
1,058,913 + Xcc-8004.1111.1 0.76 -0.9
1,058,913 + Xcc-8004.1111.1 0.76 +0.8
1,058,913 + Xcc-8004.1111.1 0.76 +0.7
1,058,914 - Xcc-8004.1111.1 0.76 +0.1
1,058,914 - Xcc-8004.1111.1 0.76 -0.6
1,058,914 - Xcc-8004.1111.1 0.76 +3.8
1,058,914 - Xcc-8004.1111.1 0.76 +1.6
1,058,914 - Xcc-8004.1111.1 0.76 +0.3
1,058,914 - Xcc-8004.1111.1 0.76 -1.9
1,058,914 - Xcc-8004.1111.1 0.76 +0.8
1,058,980 + Xcc-8004.1111.1 0.86 +1.9
1,058,980 + Xcc-8004.1111.1 0.86 +0.4
1,058,981 - Xcc-8004.1111.1 0.86 -1.4
1,058,981 - Xcc-8004.1111.1 0.86 +1.0
1,058,981 - Xcc-8004.1111.1 0.86 -1.0
1,058,981 - Xcc-8004.1111.1 0.86 -1.9
1,058,981 - Xcc-8004.1111.1 0.86 -0.1
1,058,981 - Xcc-8004.1111.1 0.86 +0.3
1,059,006 + +0.3
1,059,158 + -2.7
1,059,158 + -2.5
1,059,158 + +2.7
1,059,159 - -0.5
1,059,159 - -2.2
1,059,159 - +0.6
1,059,190 + -0.1
1,059,768 + Xcc-8004.1112.1 0.70 -1.8
1,059,768 + Xcc-8004.1112.1 0.70 -2.0
1,059,768 + Xcc-8004.1112.1 0.70 +1.1
1,059,768 + Xcc-8004.1112.1 0.70 -0.3
1,059,768 + Xcc-8004.1112.1 0.70 -1.1
1,059,768 + Xcc-8004.1112.1 0.70 -1.7
1,059,769 - Xcc-8004.1112.1 0.70 +0.8
1,059,769 - Xcc-8004.1112.1 0.70 +1.6
1,059,962 + -0.7
1,059,990 + +0.1

Or see this region's nucleotide sequence